Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G021000.1 |
Family | AA1 |
Protein Properties | Length: 497 Molecular Weight: 55647.6 Isoelectric Point: 5.7384 |
Chromosome | Chromosome/Scaffold: 02 Start: 1252289 End: 1255135 |
Description | SKU5 similar 18 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA1 | 40 | 494 | 0 |
KQVIVINDQFPGPLLNATTNDVLNINIHNNLTEPFLMTWNGLQMRRNSWQDGVQETNCPILPGRNWTYSFQVKDQIGSFFYFPSLLLHKAAGGYGPIRVN NREVIPIPFPQPHGDIDVLIGDWYSADHRDLRALLDNGTGLQNPSGILINGRGPNETVFEFQPGATYRLRISNVGLKTSLNFRIQDHLMLLVETEGSYTA QQTYSNLDIHVGQSYSVLVTAKNQTSGKSYYMVASSRLTDAELFGVGVIRYPNSDDFPSGPLPPGPQLHDYFYSIEQARSIRWNLSAGAARPNPQGSYHY GSINVSRTIVLRNGETDINRHLYTVNGVSFVSQGTPLKMADYFELETLKTGIFPDTPIGNGISTLDTSVINANYREFYHLVFENPTPSLQTWHLDGYNFF VVGMEFGTSSWEEDMKATYNLNDAVSRSTVQVYPFGWTAVMVMLDNQGLWNLRSQ |
Full Sequence |
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Protein Sequence Length: 497 Download |
MSPFSLLFYL SSLAVLVDGK SLSYDWTVSF SHRAPLALTK QVIVINDQFP GPLLNATTND 60 VLNINIHNNL TEPFLMTWNG LQMRRNSWQD GVQETNCPIL PGRNWTYSFQ VKDQIGSFFY 120 FPSLLLHKAA GGYGPIRVNN REVIPIPFPQ PHGDIDVLIG DWYSADHRDL RALLDNGTGL 180 QNPSGILING RGPNETVFEF QPGATYRLRI SNVGLKTSLN FRIQDHLMLL VETEGSYTAQ 240 QTYSNLDIHV GQSYSVLVTA KNQTSGKSYY MVASSRLTDA ELFGVGVIRY PNSDDFPSGP 300 LPPGPQLHDY FYSIEQARSI RWNLSAGAAR PNPQGSYHYG SINVSRTIVL RNGETDINRH 360 LYTVNGVSFV SQGTPLKMAD YFELETLKTG IFPDTPIGNG ISTLDTSVIN ANYREFYHLV 420 FENPTPSLQT WHLDGYNFFV VGMEFGTSSW EEDMKATYNL NDAVSRSTVQ VYPFGWTAVM 480 VMLDNQGLWN LRSQDV* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00044 | PLN00044 | 1.0e-174 | 24 | 496 | 495 | + multi-copper oxidase-related protein; Provisional | ||
PLN02835 | PLN02835 | 1.0e-180 | 24 | 493 | 475 | + oxidoreductase | ||
PLN02168 | PLN02168 | 0 | 14 | 496 | 491 | + copper ion binding / pectinesterase | ||
PLN02354 | PLN02354 | 0 | 24 | 494 | 480 | + copper ion binding / oxidoreductase | ||
PLN02991 | PLN02991 | 0 | 24 | 494 | 474 | + oxidoreductase |
Gene Ontology | |
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GO Term | Description |
GO:0005507 | copper ion binding |
GO:0016491 | oxidoreductase activity |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM67203.1 | 0 | 23 | 494 | 28 | 500 | pectinesterase, putative [Arabidopsis thaliana] |
GenBank | ABK28469.1 | 0 | 23 | 494 | 28 | 499 | unknown [Arabidopsis thaliana] |
GenBank | ACN40384.1 | 0 | 24 | 496 | 29 | 515 | unknown [Picea sitchensis] |
RefSeq | NP_177707.1 | 0 | 23 | 494 | 28 | 500 | sks18 (SKU5 Similar 18); copper ion binding / pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002300700.1 | 0 | 1 | 496 | 1 | 496 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1asq_B | 0 | 24 | 494 | 6 | 508 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1asq_A | 0 | 24 | 494 | 6 | 508 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1asp_B | 0 | 24 | 494 | 6 | 508 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1asp_A | 0 | 24 | 494 | 6 | 508 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1aso_B | 0 | 24 | 494 | 6 | 508 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |