Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G059600.1 |
Family | CBM43 |
Protein Properties | Length: 256 Molecular Weight: 26339.4 Isoelectric Point: 4.9918 |
Chromosome | Chromosome/Scaffold: 02 Start: 4035228 End: 4038753 |
Description | Carbohydrate-binding X8 domain superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 112 | 194 | 3.4e-35 |
WCIASQSASPTALQVALDYACGYGGADCSAIQPSGSCYNPNTLRDHASYAFNSYYQKNPVPSSCNFGGTAVTTSTNPSTGTCQ |
Full Sequence |
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Protein Sequence Length: 256 Download |
MGGRVIYSLM FFLLGLFLSS GSSVAEMLAD ENSRQADHGT KQVVVDASSI SSTRKDITTP 60 ITTVPTIIPT TPTASTPVIN PNSEPDSTSP ATMTPMVTPT STASPVSPGA SWCIASQSAS 120 PTALQVALDY ACGYGGADCS AIQPSGSCYN PNTLRDHASY AFNSYYQKNP VPSSCNFGGT 180 AVTTSTNPST GTCQFPSTST SSSILNTTNS NGATVYGAVP SNPTPSVAAR INETPHFMSV 240 TFLIVFLAQL TSSLC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam07983 | X8 | 1.0e-22 | 111 | 182 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 2.0e-38 | 111 | 195 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | EEC79758.1 | 0 | 29 | 208 | 28 | 205 | hypothetical protein OsI_21142 [Oryza sativa Indica Group] |
RefSeq | NP_001031450.1 | 0 | 83 | 246 | 53 | 216 | unknown protein [Arabidopsis thaliana] |
RefSeq | XP_002283721.1 | 0 | 1 | 247 | 1 | 234 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002300880.1 | 0 | 109 | 188 | 1 | 80 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002441577.1 | 0 | 70 | 208 | 39 | 170 | hypothetical protein SORBIDRAFT_09g029700 [Sorghum bicolor] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 1e-17 | 100 | 199 | 2 | 100 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |