| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.002G080700.1 |
| Family | GH35 |
| Protein Properties | Length: 799 Molecular Weight: 89526.7 Isoelectric Point: 9.7492 |
| Chromosome | Chromosome/Scaffold: 02 Start: 5602172 End: 5608374 |
| Description | beta-galactosidase 16 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH35 | 15 | 319 | 0 |
| LVINGKHKIIFSGSIHYPRSTPQMWPYLISKARAGGLDAIDTYVFWNLHEPQQGQYDFSGRKDLVRFIKEVHAQGLYVCLRIGPFIESEWTYGGLPFWLH DVPGIVFRSDNKPFKYHMERYAKMIVKMLKAEKLYASQGGPIILSQIENEYGNVEAAFHEKGPPYVKWAAKMAVGLHTGVPWVMCKQDDAPDPVINACNG LRCGETFSGPNSPRKPAIWTENWTSVYQTYGKETRSRSAEDIAFHAALFIAKGGSFVNYYMYHGGTNFGRTAAEYVPTSYYDQAPLDEYGLLRQPKHGHL KELHA | |||
| Full Sequence |
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| Protein Sequence Length: 799 Download |
| MAHGGSNVTY DSRSLVINGK HKIIFSGSIH YPRSTPQMWP YLISKARAGG LDAIDTYVFW 60 NLHEPQQGQY DFSGRKDLVR FIKEVHAQGL YVCLRIGPFI ESEWTYGGLP FWLHDVPGIV 120 FRSDNKPFKY HMERYAKMIV KMLKAEKLYA SQGGPIILSQ IENEYGNVEA AFHEKGPPYV 180 KWAAKMAVGL HTGVPWVMCK QDDAPDPVIN ACNGLRCGET FSGPNSPRKP AIWTENWTSV 240 YQTYGKETRS RSAEDIAFHA ALFIAKGGSF VNYYMYHGGT NFGRTAAEYV PTSYYDQAPL 300 DEYGLLRQPK HGHLKELHAA IKLCRKPLLS RKWINFSLGQ LQEAFAFERN SDECAAFLVN 360 HDGRSNATVH FKGSSYKLPP KSISILPHCK TVAFNTAQVS TQYGTRLATR RHKFDSIEQW 420 KEYKEYIPSF DKSSLRANTL LEHMNTTKDS SDYLWYTFRF HQNSSNAHSV LTVNSLGHNL 480 HAFVNGEFIG SAHGSHDNKS FTLQRSLPLK RGTNYVSLLS VMTGLPDAGA YLERRVAGLR 540 RVTIQRQHEL HDFTTYLWGY KVGLSGENIQ LHRNNASVKA YWSRYASSSR PLTWYKSIFD 600 APAGNDPVAL NLASMGKGEA WVNGRSIGRY WVSFLDSDGN PYQTWNHIPR SFLKPSGNLL 660 VILEEERGNP LGISLGTMSI TKVCGHVSIS HPPPVISWQG ENQINGTRKR KYGRRPKVQL 720 RCPRGRKISS VLFSSFGTPS GDCEAYAIGS CHASNSRATV EKACLGKERC SIPVSSKNFK 780 GDPCPGIAKS LLVDAKCA* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| pfam02449 | Glyco_hydro_42 | 8.0e-8 | 30 | 173 | 158 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. |
| COG1874 | LacA | 3.0e-21 | 8 | 185 | 186 | + Beta-galactosidase [Carbohydrate transport and metabolism] |
| pfam02140 | Gal_Lectin | 4.0e-24 | 720 | 797 | 81 | + Galactose binding lectin domain. |
| pfam01301 | Glyco_hydro_35 | 5.0e-150 | 14 | 321 | 322 | + Glycosyl hydrolases family 35. |
| PLN03059 | PLN03059 | 0 | 1 | 798 | 832 | + beta-galactosidase; Provisional |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI18990.1 | 0 | 5 | 798 | 25 | 817 | unnamed protein product [Vitis vinifera] |
| EMBL | CBI18991.1 | 0 | 9 | 797 | 33 | 820 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002284529.1 | 0 | 9 | 797 | 25 | 812 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002302225.1 | 0 | 1 | 798 | 1 | 798 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002306647.1 | 0 | 7 | 798 | 1 | 764 | predicted protein [Populus trichocarpa] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3d3a_A | 9.99967e-42 | 14 | 317 | 14 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3d3a_A | 0.002 | 576 | 664 | 493 | 572 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_D | 7e-35 | 8 | 308 | 11 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| PDB | 3thd_C | 7e-35 | 8 | 308 | 11 | 322 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO778160 | 705 | 7 | 680 | 0 |
| HO780602 | 590 | 58 | 635 | 0 |
| HO795552 | 529 | 98 | 614 | 0 |
| HO795552 | 54 | 6 | 59 | 0 |
| HO795552 | 40 | 59 | 98 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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