Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.002G089200.1 |
Family | GH17 |
Protein Properties | Length: 321 Molecular Weight: 34784.5 Isoelectric Point: 4.5581 |
Chromosome | Chromosome/Scaffold: 02 Start: 6335695 End: 6336657 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH17 | 7 | 316 | 0 |
IGINYGLNGDNLPAPPAVVGLYERCHIPSVRLFEPRPEVLQALRGKPLQVILGTRNEDIQSLATTLDAANSWVAANIVPYRSDVNFTYITVGNEAIPGAM SQYIAQAIANMYTALADAAITYIKVSTVVPGSSLSISYPPSAGAFTHEAAAVISSIAPILLNHGASLMLNVYPYFAYASDTNSMSLDYALLRPGAPLVGD QNLVYDNIFDAMVDAFYAALEKISEPGLTVVISESGWPTAGNEPITSPENARTYNRNLLNHVQEGRGTPRRPGQPLDVYFFAMFNEDLKQAGIEQHWGFF YPNMQPVYPF |
Full Sequence |
---|
Protein Sequence Length: 321 Download |
MIIAGAIGIN YGLNGDNLPA PPAVVGLYER CHIPSVRLFE PRPEVLQALR GKPLQVILGT 60 RNEDIQSLAT TLDAANSWVA ANIVPYRSDV NFTYITVGNE AIPGAMSQYI AQAIANMYTA 120 LADAAITYIK VSTVVPGSSL SISYPPSAGA FTHEAAAVIS SIAPILLNHG ASLMLNVYPY 180 FAYASDTNSM SLDYALLRPG APLVGDQNLV YDNIFDAMVD AFYAALEKIS EPGLTVVISE 240 SGWPTAGNEP ITSPENARTY NRNLLNHVQE GRGTPRRPGQ PLDVYFFAMF NEDLKQAGIE 300 QHWGFFYPNM QPVYPFWQCS * |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG5309 | COG5309 | 4.0e-10 | 45 | 309 | 274 | + Exo-beta-1,3-glucanase [Carbohydrate transport and metabolism] | ||
pfam00332 | Glyco_hydro_17 | 2.0e-107 | 7 | 316 | 312 | + Glycosyl hydrolases family 17. |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABN05912.1 | 0 | 6 | 319 | 27 | 319 | Glycoside hydrolase, family 17 [Medicago truncatula] |
GenBank | ABN05913.1 | 0 | 3 | 319 | 23 | 338 | Glycoside hydrolase, family 17 [Medicago truncatula] |
GenBank | ACF06549.1 | 0 | 6 | 316 | 28 | 336 | beta-1,3-glucanase [Elaeis guineensis] |
RefSeq | XP_002302261.1 | 0 | 1 | 320 | 1 | 320 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306606.1 | 0 | 8 | 317 | 1 | 309 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2cyg_A | 0 | 7 | 314 | 1 | 308 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1ghr_A | 0 | 7 | 315 | 1 | 303 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |
PDB | 1aq0_B | 0 | 7 | 315 | 1 | 303 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 1aq0_A | 0 | 7 | 315 | 1 | 303 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
PDB | 3f55_D | 0 | 7 | 314 | 2 | 311 | A Chain A, Barley 1,3-1,4-Beta-Glucanase In Monoclinic Space Group |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
GR710242 | 278 | 14 | 291 | 0 |
DC899652 | 324 | 4 | 318 | 0 |
JK802300 | 237 | 81 | 317 | 0 |
DY263355 | 315 | 4 | 314 | 0 |
JK804435 | 231 | 87 | 317 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|