Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G110000.2 |
Family | PL4 |
Protein Properties | Length: 529 Molecular Weight: 60307.7 Isoelectric Point: 4.9984 |
Chromosome | Chromosome/Scaffold: 02 Start: 8108825 End: 8111883 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 1 | 500 | 0 |
MLRGSSGFYSYAIYEHLKEWPGFNLGETRIAFKLRKDKFHYMIAADNRQRYMPLPDDRLPPRGQPLAYPEAVQLVNPVEPDFKGEVDDKYQYSIENKDNK VHGWICMDPAVGFWQITPSDEFRSGGPVKQNLTSHVGPTTLVMFLSAHYSGEDLVPKIGAGEAWKKVFGPVFMYFNSVMDGDDPLSLWEDAKLQMLIEVQ SWPYGFPASEDYQKSDQRGNVSGRLLVRDRFVSDDYTPANGAYVGLALPGDVGSWQRECKDYQFWNRADEGGYFSINNVRTGDYNLYAWVPGVIGDYRYD VSITITSGCDIEMGDLVYEPPRDGPTLWEIGIPDRSAEEFYVPDPNPKYINKLYVNHPDRFRQYGLWERYAELYPDGDLVYTVGVSDYRKDWFYAQVTRK KDDNTYQRTTWQIKFNLDKVDHNGIYKLRVALASATVSELQVRINDPKAKPLFSSGLIGKDNSIARHGIHGLYWLYGIDVPGARLVEGDNAVFLTQPRSI |
Full Sequence |
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Protein Sequence Length: 529 Download |
MLRGSSGFYS YAIYEHLKEW PGFNLGETRI AFKLRKDKFH YMIAADNRQR YMPLPDDRLP 60 PRGQPLAYPE AVQLVNPVEP DFKGEVDDKY QYSIENKDNK VHGWICMDPA VGFWQITPSD 120 EFRSGGPVKQ NLTSHVGPTT LVMFLSAHYS GEDLVPKIGA GEAWKKVFGP VFMYFNSVMD 180 GDDPLSLWED AKLQMLIEVQ SWPYGFPASE DYQKSDQRGN VSGRLLVRDR FVSDDYTPAN 240 GAYVGLALPG DVGSWQRECK DYQFWNRADE GGYFSINNVR TGDYNLYAWV PGVIGDYRYD 300 VSITITSGCD IEMGDLVYEP PRDGPTLWEI GIPDRSAEEF YVPDPNPKYI NKLYVNHPDR 360 FRQYGLWERY AELYPDGDLV YTVGVSDYRK DWFYAQVTRK KDDNTYQRTT WQIKFNLDKV 420 DHNGIYKLRV ALASATVSEL QVRINDPKAK PLFSSGLIGK DNSIARHGIH GLYWLYGIDV 480 PGARLVEGDN AVFLTQPRSI SPFQGIMYDY IRLEGPPSSS SNSPETSF* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd10316 | RGL4_M | 5.0e-32 | 217 | 316 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 7.0e-46 | 1 | 86 | 86 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
cd10320 | RGL4_N | 5.0e-55 | 1 | 187 | 187 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10317 | RGL4_C | 7.0e-56 | 328 | 514 | 189 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 523 | 115 | 651 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 1 | 523 | 99 | 622 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301112.1 | 0 | 1 | 528 | 99 | 626 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002306520.1 | 0 | 1 | 517 | 99 | 616 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 1 | 522 | 118 | 639 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
GW864372 | 311 | 30 | 340 | 0 |
EL409069 | 278 | 233 | 508 | 0 |
DY922281 | 278 | 157 | 433 | 0 |
EH722500 | 263 | 64 | 326 | 0 |
FY792769 | 269 | 219 | 486 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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