Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.002G110100.1 |
Family | PL4 |
Protein Properties | Length: 684 Molecular Weight: 76816.5 Isoelectric Point: 5.9026 |
Chromosome | Chromosome/Scaffold: 02 Start: 8114529 End: 8120525 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
PL4 | 49 | 658 | 0 |
VVQLHIQKDYVVLDNGILQVTLSNPGGHVTGIQYNGLENLLETDNGESDRGYWDVVWSGEGVTRKKGNLDRLDGTNLTVVVESEEKVEISFTRMWNSSLQ AKVVPLNFDKRYVMLRGSSGFYTYAIYEHLRGWPAFDLDNTRIVFKLTRQKFRYMAIADNRQRYMPLPEDRSPERGQTLAYPEAVLLVHPVEPEFEGEVD DKYAYSCESKDISVHGWISADPLVGFWQITPSHEFRTGGPLKQFLTSHVGPTNLGVMHSTHYAGADVTIKIGPNEPWKKVYGPVFAYVNSLSDGRDPLSL WKDAKKQMMNEVHKWPYDFIASEDFPPSKQRGSVGGRLLVLERYVSNATISAEGAYVGLAAPGEAGSWQLESKGYQFWTKTDEGGNFTINGIRPGDYNLY AWVPGFIGDYKFTSVININSGSNIDIGDLVYEAPRNGSTLWEIGFPDRSAAEFYIPDANPKYINKLYLKQERYRQYGLWERYAELYPKADLVFTVGKSNH TTDWFFAQVTRKKDNTTYEGTTWQIKFLLDEVDERAAYKLRMALATANVAELEVRVNEPNANPVFSTGEIGKDNTIARHGIHGLYRLFNVDIPGAQLLIG NNTIFLTQTA |
Full Sequence |
---|
Protein Sequence Length: 684 Download |
MGSGKILCTI LSLFSQFMAA FSNLQQNENP SMGFHGGEKG TGSSLLSEVV QLHIQKDYVV 60 LDNGILQVTL SNPGGHVTGI QYNGLENLLE TDNGESDRGY WDVVWSGEGV TRKKGNLDRL 120 DGTNLTVVVE SEEKVEISFT RMWNSSLQAK VVPLNFDKRY VMLRGSSGFY TYAIYEHLRG 180 WPAFDLDNTR IVFKLTRQKF RYMAIADNRQ RYMPLPEDRS PERGQTLAYP EAVLLVHPVE 240 PEFEGEVDDK YAYSCESKDI SVHGWISADP LVGFWQITPS HEFRTGGPLK QFLTSHVGPT 300 NLGVMHSTHY AGADVTIKIG PNEPWKKVYG PVFAYVNSLS DGRDPLSLWK DAKKQMMNEV 360 HKWPYDFIAS EDFPPSKQRG SVGGRLLVLE RYVSNATISA EGAYVGLAAP GEAGSWQLES 420 KGYQFWTKTD EGGNFTINGI RPGDYNLYAW VPGFIGDYKF TSVININSGS NIDIGDLVYE 480 APRNGSTLWE IGFPDRSAAE FYIPDANPKY INKLYLKQER YRQYGLWERY AELYPKADLV 540 FTVGKSNHTT DWFFAQVTRK KDNTTYEGTT WQIKFLLDEV DERAAYKLRM ALATANVAEL 600 EVRVNEPNAN PVFSTGEIGK DNTIARHGIH GLYRLFNVDI PGAQLLIGNN TIFLTQTASI 660 SPFQGVMYDY IRLEGPPPPH KAL* |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam13620 | CarboxypepD_reg | 0.003 | 427 | 454 | 28 | + Carboxypeptidase regulatory-like domain. | ||
cd10316 | RGL4_M | 4.0e-28 | 378 | 463 | 86 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 2.0e-52 | 489 | 674 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 1.0e-66 | 55 | 338 | 287 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 7.0e-88 | 51 | 247 | 197 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002301113.1 | 0 | 1 | 683 | 1 | 683 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301114.1 | 0 | 50 | 679 | 6 | 634 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 50 | 677 | 6 | 634 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 0 | 56 | 677 | 125 | 747 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527356.1 | 0 | 120 | 247 | 1 | 128 | lyase, putative [Ricinus communis] |