Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G110200.2 |
Family | PL4 |
Protein Properties | Length: 641 Molecular Weight: 72851.8 Isoelectric Point: 4.5742 |
Chromosome | Chromosome/Scaffold: 02 Start: 8124608 End: 8128838 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 8 | 612 | 0 |
LLIEDQHVVMDNGILQVTLSNPGGIVTGIQYNGIDNLLEALDLETNRGYWDLVWSQAGSTGTTGTFDVFEGTTFRVIVENEEQVEISFTRTWDPSLEGKF VSLNLDKRFIMLRNSSGFYSYAIFEHLADWPPFNLPQTRIVFQLRKDKFHYMVVADNRQRFMPLPDDRQPERGEPLDFPEAVLLVDPVEPEFKGEVDDKY QYSCENKDLHVHGWMCFDPPTGFWQITPSSEFRSGGPLKQNLTSHVGPYTLAMFLSAHYAGEDLVLKLNPGEPWKKVFGPVFMYLNSVMDKDNALSLWDD AKEQEVHCWPYSFPASEDFPCSDQRGKISGRLQVLDRYISHECIAANDAYVGLAPPGDVGSWQRECKGYQFWTKTDGDGSFCIGDIRTGDYNLYAWIPGF IGDYRNDTVITVTAGCEIDVGDLVYEPPRDGPTVWEIGIPDRSAAEFYIPDPNPKYINKLFINHPDRFRQYGLWERYADLYPDGDLVYKVGHSDYKKDWF FAQVNRKKDDGTLEGTTWQIRFKLDNVDQSGAFKLRLALATANVAELQVRINDPKIDPPHFSTGEIGHDNTIARHGVHGLYRLYNVDVPGTTLVEGENTV FLTQT |
Full Sequence |
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Protein Sequence Length: 641 Download |
MSTPRVQLLI EDQHVVMDNG ILQVTLSNPG GIVTGIQYNG IDNLLEALDL ETNRGYWDLV 60 WSQAGSTGTT GTFDVFEGTT FRVIVENEEQ VEISFTRTWD PSLEGKFVSL NLDKRFIMLR 120 NSSGFYSYAI FEHLADWPPF NLPQTRIVFQ LRKDKFHYMV VADNRQRFMP LPDDRQPERG 180 EPLDFPEAVL LVDPVEPEFK GEVDDKYQYS CENKDLHVHG WMCFDPPTGF WQITPSSEFR 240 SGGPLKQNLT SHVGPYTLAM FLSAHYAGED LVLKLNPGEP WKKVFGPVFM YLNSVMDKDN 300 ALSLWDDAKE QEVHCWPYSF PASEDFPCSD QRGKISGRLQ VLDRYISHEC IAANDAYVGL 360 APPGDVGSWQ RECKGYQFWT KTDGDGSFCI GDIRTGDYNL YAWIPGFIGD YRNDTVITVT 420 AGCEIDVGDL VYEPPRDGPT VWEIGIPDRS AAEFYIPDPN PKYINKLFIN HPDRFRQYGL 480 WERYADLYPD GDLVYKVGHS DYKKDWFFAQ VNRKKDDGTL EGTTWQIRFK LDNVDQSGAF 540 KLRLALATAN VAELQVRIND PKIDPPHFST GEIGHDNTIA RHGVHGLYRL YNVDVPGTTL 600 VEGENTVFLT QTPRTSPLQG IMYDYIRLEG PPPPDSKETL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd10316 | RGL4_M | 3.0e-32 | 331 | 430 | 100 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10317 | RGL4_C | 4.0e-53 | 442 | 629 | 190 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
cd10320 | RGL4_N | 3.0e-75 | 11 | 301 | 294 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
pfam06045 | Rhamnogal_lyase | 6.0e-101 | 1 | 203 | 203 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI19298.1 | 0 | 1 | 639 | 1 | 652 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002285626.1 | 0 | 17 | 639 | 1 | 623 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301114.1 | 0 | 1 | 640 | 1 | 640 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 6 | 632 | 6 | 634 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 1 | 636 | 1 | 639 | lyase, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY293973 | 350 | 1 | 344 | 0 |
DW479599 | 295 | 1 | 295 | 0 |
DW479600 | 297 | 1 | 297 | 0 |
DT552229 | 293 | 17 | 308 | 0 |
FC896579 | 284 | 69 | 346 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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