| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.002G110300.1 |
| Family | PL4 |
| Protein Properties | Length: 732 Molecular Weight: 84187.5 Isoelectric Point: 5.3444 |
| Chromosome | Chromosome/Scaffold: 02 Start: 8130507 End: 8134559 |
| Description | Rhamnogalacturonate lyase family protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
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| Family | Start | End | Evalue |
| PL4 | 139 | 709 | 0 |
| PSCHISSFSLVPKCYSYLSSSSYVPPFRIKGESFRVVVENEEQVEISFTRMWDPSLEGKLAPLNIDKRFIMLRNSSGFYSYAIYEHFKEWPAFNLPQTRI VFKLRKDKFHYMAVADNRQRCMPLPEDRLPKRGEPLAYPEAVLLVNPVEAEFKGEVDDKYQYSCENKDLQVHGWICFNPPVGFWQITPSNEFRSGGPLKQ NLSSHVGPISLAMFLSAHYSGEDMVLKLKPGEPWKKVFGPVFIYLNTLLDDQNEPRWLWEDAKKQMLIEVQNWPYSFPASEDFPSSEQRGCVNGRLQVQD RFISDYCIPGNGACVGLAPPGDIGSWQRECKGYQFWTKADPEGYFSINDIRTGDYNLYAWIPGFIGDYRNDEVITITPGCDLDLGDVIYKPPRDGPTLWE IGIPNRSAAEFYVPDPDPKYINELYVNHPDRFRQYGLWERYADLYPDEDLVYTVGTSDYAKDWFFAQVTRKKDDNSYQGTTWQIKFKLDNVQNSGSYKLR LALATANVAELQVRINSLETNPWSTGVIGHDNTIMRHGIHGLYWLYNIEVPGSELVEEDNTIFLTQTMATS | |||
| Full Sequence |
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| Protein Sequence Length: 732 Download |
| MSNQGVQLHI QERHVVMDNG ILQVTLSKPE GIVTGIQYNG ISNLLEVLND ESNRGYMAFK 60 HKSRYLSVGS VARYLYYWSE YADIGILYGV KKEAQEPQEH PMRMKLLFFL TGSIMMFLGF 120 SFRVICLVTR YIHFIFPIPS CHISSFSLVP KCYSYLSSSS YVPPFRIKGE SFRVVVENEE 180 QVEISFTRMW DPSLEGKLAP LNIDKRFIML RNSSGFYSYA IYEHFKEWPA FNLPQTRIVF 240 KLRKDKFHYM AVADNRQRCM PLPEDRLPKR GEPLAYPEAV LLVNPVEAEF KGEVDDKYQY 300 SCENKDLQVH GWICFNPPVG FWQITPSNEF RSGGPLKQNL SSHVGPISLA MFLSAHYSGE 360 DMVLKLKPGE PWKKVFGPVF IYLNTLLDDQ NEPRWLWEDA KKQMLIEVQN WPYSFPASED 420 FPSSEQRGCV NGRLQVQDRF ISDYCIPGNG ACVGLAPPGD IGSWQRECKG YQFWTKADPE 480 GYFSINDIRT GDYNLYAWIP GFIGDYRNDE VITITPGCDL DLGDVIYKPP RDGPTLWEIG 540 IPNRSAAEFY VPDPDPKYIN ELYVNHPDRF RQYGLWERYA DLYPDEDLVY TVGTSDYAKD 600 WFFAQVTRKK DDNSYQGTTW QIKFKLDNVQ NSGSYKLRLA LATANVAELQ VRINSLETNP 660 WSTGVIGHDN TIMRHGIHGL YWLYNIEVPG SELVEEDNTI FLTQTMATSP FQGIMYDYIR 720 LEGPPSSNSD N* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam06045 | Rhamnogal_lyase | 1.0e-17 | 1 | 56 | 56 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| cd10317 | RGL4_C | 1.0e-53 | 537 | 722 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| cd10320 | RGL4_N | 4.0e-63 | 171 | 385 | 215 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. | ||
| pfam06045 | Rhamnogal_lyase | 6.0e-66 | 166 | 294 | 129 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. | ||
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002285626.1 | 0.000000001 | 17 | 56 | 1 | 40 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002285626.1 | 0 | 167 | 731 | 57 | 622 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002301114.1 | 0 | 152 | 729 | 60 | 636 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002301115.1 | 0 | 1 | 731 | 1 | 731 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002527357.1 | 0 | 152 | 729 | 60 | 639 | lyase, putative [Ricinus communis] |
