Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G110300.2 |
Family | PL4 |
Protein Properties | Length: 686 Molecular Weight: 79096.9 Isoelectric Point: 5.1718 |
Chromosome | Chromosome/Scaffold: 02 Start: 8130324 End: 8134559 |
Description | Rhamnogalacturonate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL4 | 93 | 663 | 0 |
PSCHISSFSLVPKCYSYLSSSSYVPPFRIKGESFRVVVENEEQVEISFTRMWDPSLEGKLAPLNIDKRFIMLRNSSGFYSYAIYEHFKEWPAFNLPQTRI VFKLRKDKFHYMAVADNRQRCMPLPEDRLPKRGEPLAYPEAVLLVNPVEAEFKGEVDDKYQYSCENKDLQVHGWICFNPPVGFWQITPSNEFRSGGPLKQ NLSSHVGPISLAMFLSAHYSGEDMVLKLKPGEPWKKVFGPVFIYLNTLLDDQNEPRWLWEDAKKQMLIEVQNWPYSFPASEDFPSSEQRGCVNGRLQVQD RFISDYCIPGNGACVGLAPPGDIGSWQRECKGYQFWTKADPEGYFSINDIRTGDYNLYAWIPGFIGDYRNDEVITITPGCDLDLGDVIYKPPRDGPTLWE IGIPNRSAAEFYVPDPDPKYINELYVNHPDRFRQYGLWERYADLYPDEDLVYTVGTSDYAKDWFFAQVTRKKDDNSYQGTTWQIKFKLDNVQNSGSYKLR LALATANVAELQVRINSLETNPWSTGVIGHDNTIMRHGIHGLYWLYNIEVPGSELVEEDNTIFLTQTMATS |
Full Sequence |
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Protein Sequence Length: 686 Download |
MAYSKSRYPN QRELSLEYNI MASAIYLKFS MMNPIEDIGI LYGVKKEAQE PQEHPMRMKL 60 LFFLTGSIMM FLGFSFRVIC LVTRYIHFIF PIPSCHISSF SLVPKCYSYL SSSSYVPPFR 120 IKGESFRVVV ENEEQVEISF TRMWDPSLEG KLAPLNIDKR FIMLRNSSGF YSYAIYEHFK 180 EWPAFNLPQT RIVFKLRKDK FHYMAVADNR QRCMPLPEDR LPKRGEPLAY PEAVLLVNPV 240 EAEFKGEVDD KYQYSCENKD LQVHGWICFN PPVGFWQITP SNEFRSGGPL KQNLSSHVGP 300 ISLAMFLSAH YSGEDMVLKL KPGEPWKKVF GPVFIYLNTL LDDQNEPRWL WEDAKKQMLI 360 EVQNWPYSFP ASEDFPSSEQ RGCVNGRLQV QDRFISDYCI PGNGACVGLA PPGDIGSWQR 420 ECKGYQFWTK ADPEGYFSIN DIRTGDYNLY AWIPGFIGDY RNDEVITITP GCDLDLGDVI 480 YKPPRDGPTL WEIGIPNRSA AEFYVPDPDP KYINELYVNH PDRFRQYGLW ERYADLYPDE 540 DLVYTVGTSD YAKDWFFAQV TRKKDDNSYQ GTTWQIKFKL DNVQNSGSYK LRLALATANV 600 AELQVRINSL ETNPWSTGVI GHDNTIMRHG IHGLYWLYNI EVPGSELVEE DNTIFLTQTM 660 ATSPFQGIMY DYIRLEGPPS SNSDN* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
cd10316 | RGL4_M | 1.0e-32 | 380 | 478 | 99 | + Middle domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle domain represented by this model and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10317 | RGL4_C | 7.0e-54 | 491 | 676 | 188 | + C-terminal domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold. Both the middle and the C-terminal domain are putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
cd10320 | RGL4_N | 6.0e-64 | 125 | 339 | 215 | + N-terminal catalytic domain of rhamnogalacturonan lyase, a family 4 polysaccharide lyase. The rhamnogalacturonan lyase of the polysaccharide lyase family 4 (RGL4) is involved in the degradation of RG (rhamnogalacturonan) type-I, an important pectic plant cell wall polysaccharide, by cleaving the alpha-1,4 glycoside bond between L-rhamnose and D-galacturonic acids in the backbone of RG type-I through a beta-elimination reaction. RGL4 consists of three domains, an N-terminal catalytic domain, a middle domain with a FNIII type fold and a C-terminal domain with a jelly roll fold; the middle and C-terminal domains are both putative carbohydrate binding modules. There are two types of RG lyases, which both cleave the alpha-1,4 bonds of the RG-I main chain (RG chain) through the beta-elimination reaction, but belong to two structurally unrelated polysaccharide lyase (PL) families, 4 and 11. |
pfam06045 | Rhamnogal_lyase | 3.0e-66 | 120 | 248 | 129 | + Rhamnogalacturonate lyase family. Rhamnogalacturonate lyase (EC:4.2.2.-) degrades the rhamnogalacturonan I (RG-I) backbone of pectin. This family contains mainly members from plants, but also contains the plant pathogen Erwinia chrysanthemi. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002285626.1 | 0 | 121 | 685 | 57 | 622 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
RefSeq | XP_002301114.1 | 0 | 106 | 683 | 60 | 636 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301115.1 | 0 | 37 | 685 | 83 | 731 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002527353.1 | 0 | 121 | 681 | 76 | 636 | lyase, putative [Ricinus communis] |
RefSeq | XP_002527357.1 | 0 | 106 | 683 | 60 | 639 | lyase, putative [Ricinus communis] |