Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G162400.1 |
Family | GH28 |
Protein Properties | Length: 471 Molecular Weight: 51466.8 Isoelectric Point: 6.2408 |
Chromosome | Chromosome/Scaffold: 02 Start: 12263026 End: 12265643 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 422 | 0 |
SSDGGSQLFVPAGKWLTGSFSLTSHFTLYLHKDAVLLASQDMQEWPVMKPLPSYGRGRDAAAGRYSSLIFGTNLTDVIITGNNGTIDGQGAFWWQNFHKG KLKYTRPYLIEIMFSDTIQISNLTLLNSPSWNVHPVYSRDILVQGITIIAPISSPNTDGINPDSCTNTKIEDCYIVSGDDCVAVKSGWDEYGIAFGMPTK QLVIRRLTCISPYSATIALGSEMSGGIEDVRAEDITAIHTESGVRIKTAVGRGGYVKDIYVKRMTMHTMKWVFWMTGNYGSHADKNYDPNALPLIQGINY RDMVADNVTMAARLEGIAGDPFKEICISNVTIGLAPKAKKVPWTCTEIEG |
Full Sequence |
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Protein Sequence Length: 471 Download |
MSLQVVLALL VVAFISFRGA ESRKARILDS FEYSAINCRA HSASLTDFGG VGDGTTSNTK 60 AFKDAIDHLS QFSSDGGSQL FVPAGKWLTG SFSLTSHFTL YLHKDAVLLA SQDMQEWPVM 120 KPLPSYGRGR DAAAGRYSSL IFGTNLTDVI ITGNNGTIDG QGAFWWQNFH KGKLKYTRPY 180 LIEIMFSDTI QISNLTLLNS PSWNVHPVYS RDILVQGITI IAPISSPNTD GINPDSCTNT 240 KIEDCYIVSG DDCVAVKSGW DEYGIAFGMP TKQLVIRRLT CISPYSATIA LGSEMSGGIE 300 DVRAEDITAI HTESGVRIKT AVGRGGYVKD IYVKRMTMHT MKWVFWMTGN YGSHADKNYD 360 PNALPLIQGI NYRDMVADNV TMAARLEGIA GDPFKEICIS NVTIGLAPKA KKVPWTCTEI 420 EGMTSGVSPR PCDLLPDQGP EKITSCDFPP ENIPIDLVQF KMCSFGMSYM * 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 3.0e-19 | 48 | 338 | 308 | + polygalacturonase | ||
PLN02218 | PLN02218 | 4.0e-23 | 42 | 384 | 357 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 3.0e-27 | 40 | 342 | 312 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 6.0e-29 | 141 | 339 | 204 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 7.0e-53 | 43 | 338 | 324 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP33475.1 | 0 | 3 | 465 | 1 | 470 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | XP_002277736.1 | 0 | 20 | 469 | 28 | 477 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002278930.1 | 0 | 19 | 470 | 29 | 480 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301370.1 | 0 | 1 | 470 | 1 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002511903.1 | 0 | 4 | 470 | 15 | 472 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 41 | 404 | 26 | 410 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 0.00000000000003 | 75 | 341 | 37 | 304 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |