Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G184500.1 |
Family | GH5 |
Protein Properties | Length: 416 Molecular Weight: 46997.6 Isoelectric Point: 5.0035 |
Chromosome | Chromosome/Scaffold: 02 Start: 14412853 End: 14415261 |
Description | Glycosyl hydrolase superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH5 | 47 | 366 | 1.5e-37 |
NNKPLYLNGFNAFWMMYMSSDPSTRSKVTSAFQQASEYGMNIARTWAFSDGGNDKPLQISPGIYNEDMFKGLDFVVSEARKYGIYLILSLVNNFKDYGGR SQYVEWARERDQQLSDDDGFYTNSVVKEYYKNHVKAVLTRINSITGVAYKDDPTIFAWELINEPHSNDTSGKLIQDWVNEMAAHVKSIDNYHLLEIGLEG FYGDSKKESNPGSYLFGTDFISNNQIPHIDFATIHLYPEQWLPNSSEDEQASFVDRWIQAHVQDSSSVLGKPLIIGEFGKSLKLPGNSLQKRDTYFVKIY SDIYNSVTRGGPFTGGLFWQ |
Full Sequence |
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Protein Sequence Length: 416 Download |
MKWLNSFFSM ALLVIFHHGQ YCCQADQSSP THHCVFAKTN GTQFVVNNKP LYLNGFNAFW 60 MMYMSSDPST RSKVTSAFQQ ASEYGMNIAR TWAFSDGGND KPLQISPGIY NEDMFKGLDF 120 VVSEARKYGI YLILSLVNNF KDYGGRSQYV EWARERDQQL SDDDGFYTNS VVKEYYKNHV 180 KAVLTRINSI TGVAYKDDPT IFAWELINEP HSNDTSGKLI QDWVNEMAAH VKSIDNYHLL 240 EIGLEGFYGD SKKESNPGSY LFGTDFISNN QIPHIDFATI HLYPEQWLPN SSEDEQASFV 300 DRWIQAHVQD SSSVLGKPLI IGEFGKSLKL PGNSLQKRDT YFVKIYSDIY NSVTRGGPFT 360 GGLFWQLLAE GMESWGDGYE VVLEESPSTA NIIDLQSRKL QSPSTANIID LQSLT* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam12876 | Cellulase-like | 0.0004 | 194 | 283 | 100 | + Sugar-binding cellulase-like. This is a putative cellulase family. | ||
pfam00150 | Cellulase | 2.0e-7 | 47 | 329 | 289 | + Cellulase (glycosyl hydrolase family 5). | ||
COG2730 | BglC | 4.0e-8 | 78 | 325 | 276 | + Endoglucanase [Carbohydrate transport and metabolism] | ||
COG3934 | COG3934 | 2.0e-21 | 76 | 379 | 306 | + Endo-beta-mannanase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAK56557.1 | 0 | 10 | 400 | 10 | 395 | mannan endo-1,4-beta-mannosidase [Solanum lycopersicum] |
GenBank | ABG88068.1 | 0 | 8 | 402 | 16 | 408 | endo-1,4-beta-mannanase [Glycine max] |
EMBL | CAC08442.1 | 0 | 37 | 402 | 45 | 414 | (1-4)-beta-mannan endohydrolase [Coffea arabica] |
RefSeq | XP_002302695.1 | 0 | 1 | 415 | 1 | 415 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515142.1 | 0 | 1 | 402 | 1 | 402 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1rh9_A | 0 | 36 | 404 | 6 | 373 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzq_A | 0 | 45 | 392 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzo_A | 0 | 45 | 392 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzn_A | 0 | 45 | 392 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |
PDB | 3pzm_A | 0 | 45 | 392 | 21 | 376 | A Chain A, Family Gh5 Endo-Beta-Mannanase From Lycopersicon Esculentum (Tomato) |