Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G186900.2 |
Family | GH28 |
Protein Properties | Length: 466 Molecular Weight: 51457 Isoelectric Point: 4.9148 |
Chromosome | Chromosome/Scaffold: 02 Start: 14672609 End: 14676164 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 73 | 416 | 0 |
ADKGGAKLFVPTGRWLTGSFDLISHLTLWLDKDAVILGSTNSDDWPVIDPLPSYGRGRELPGRRHKSLIYGRNLTDVIITGDNGTIDGQGSIWWDWFRNQ TLNYTRPHLVEFMNTTGVVISNLTFINSPFWTIHPVYCSQVIVQNVTILAPLDSPNTDGIDPDSSDDVCVEDCYVSTGDDIIAIKSGWDEYGMSYGRPSK NITIRRLVGQTTSAGIAIGSEMSGGVSEVHAENLRFYNSTTGIRIKTSPGRGGYVRNIYISNMSLTDVKTAISFTGRYGEHPDEYYDPTALPLIERITVE DVAGQNVKYAGLLEGIEGDTFLDICLLNINLSVTSKSPWNCSYI |
Full Sequence |
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Protein Sequence Length: 466 Download |
MRRSFTLVNV LLLLALFGDA PWAIKCSLLC EQGNLAVIRP HSVTITEFGA VGDGVTLNTK 60 AFQNAIFYLN SFADKGGAKL FVPTGRWLTG SFDLISHLTL WLDKDAVILG STNSDDWPVI 120 DPLPSYGRGR ELPGRRHKSL IYGRNLTDVI ITGDNGTIDG QGSIWWDWFR NQTLNYTRPH 180 LVEFMNTTGV VISNLTFINS PFWTIHPVYC SQVIVQNVTI LAPLDSPNTD GIDPDSSDDV 240 CVEDCYVSTG DDIIAIKSGW DEYGMSYGRP SKNITIRRLV GQTTSAGIAI GSEMSGGVSE 300 VHAENLRFYN STTGIRIKTS PGRGGYVRNI YISNMSLTDV KTAISFTGRY GEHPDEYYDP 360 TALPLIERIT VEDVAGQNVK YAGLLEGIEG DTFLDICLLN INLSVTSKSP WNCSYIQGYS 420 DTVSPEICEP LRERIFPDHY SDCYCLSHHL QSSSNQNRGG AWLSW* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 1.0e-25 | 45 | 420 | 389 | + polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-27 | 40 | 344 | 313 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 5.0e-30 | 41 | 344 | 314 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-32 | 147 | 416 | 282 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-66 | 43 | 360 | 341 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37055.1 | 0 | 1 | 465 | 1 | 466 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002273855.1 | 0 | 17 | 465 | 68 | 517 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301554.1 | 0 | 1 | 455 | 1 | 455 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002320934.1 | 0 | 8 | 433 | 1 | 426 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002535132.1 | 0 | 4 | 465 | 14 | 476 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 0 | 41 | 398 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 0 | 41 | 398 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 0 | 41 | 398 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 0 | 41 | 398 | 26 | 405 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 2e-20 | 39 | 392 | 153 | 545 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |