Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G202100.1 |
Family | GH28 |
Protein Properties | Length: 414 Molecular Weight: 43606.2 Isoelectric Point: 6.8159 |
Chromosome | Chromosome/Scaffold: 02 Start: 16373280 End: 16375305 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 400 | 0 |
RAACDSGAPAKMVIPGGTFLTSPVVFQGPCKSTEPIVFEVQGNVKATTDLSEYSSEQWILFEIIDGLTLNGGGTFDGQGSAVWKYNDCHQNKECQPLPSS IKLSKVKNAFVHEISSVDSKYFHMHVTSCNSISIHNINLTAPANSPNTDGIHISHSDGVHVTSSKIGTGDDCISIGQGSTNILISQVFCGPGHGLSVGSL GKYKNEEDVRGIVVTNCTLFNTTNGVRIKSYAASDPSQALNITFKDITMDSVKNPIIIDQKYGSRNGAPSRVKISNVHYQNIKGTSTSDVAVSFSCSSLV PCQGVELVDIDLAYIGQKANVPLSASCLNAN |
Full Sequence |
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Protein Sequence Length: 414 Download |
MTIAGSILVL GLALLSCVAD GALRHHIGLS DRRSLIDGSG AAVTVFDVTK HGAKADDKTD 60 NAEAFIQTWR AACDSGAPAK MVIPGGTFLT SPVVFQGPCK STEPIVFEVQ GNVKATTDLS 120 EYSSEQWILF EIIDGLTLNG GGTFDGQGSA VWKYNDCHQN KECQPLPSSI KLSKVKNAFV 180 HEISSVDSKY FHMHVTSCNS ISIHNINLTA PANSPNTDGI HISHSDGVHV TSSKIGTGDD 240 CISIGQGSTN ILISQVFCGP GHGLSVGSLG KYKNEEDVRG IVVTNCTLFN TTNGVRIKSY 300 AASDPSQALN ITFKDITMDS VKNPIIIDQK YGSRNGAPSR VKISNVHYQN IKGTSTSDVA 360 VSFSCSSLVP CQGVELVDID LAYIGQKANV PLSASCLNAN IVKSGGKQNP GCN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 3.0e-84 | 45 | 381 | 347 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 1.0e-86 | 19 | 413 | 404 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-91 | 34 | 399 | 371 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 1.0e-97 | 73 | 396 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 4.0e-136 | 40 | 410 | 378 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36886.1 | 0 | 3 | 412 | 8 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268540.1 | 0 | 3 | 412 | 8 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301488.1 | 0 | 63 | 413 | 2 | 353 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 1 | 413 | 1 | 413 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336609.1 | 0 | 64 | 381 | 1 | 318 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-18 | 136 | 396 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-18 | 136 | 396 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-18 | 136 | 396 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-18 | 136 | 396 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-18 | 136 | 396 | 72 | 336 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |