Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.002G202200.1 |
Family | GH28 |
Protein Properties | Length: 415 Molecular Weight: 43728.4 Isoelectric Point: 6.6803 |
Chromosome | Chromosome/Scaffold: 02 Start: 16389723 End: 16391749 |
Description | polygalacturonase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 70 | 401 | 0 |
RAACDSGAPAKMVIPGGTFLTSPVVFQGPCKSTEPIVFEVQGNVKATTDLSEYSSEQWILFEIIDGLTLNGGGTFDGQGSAVWKYNDCHQNKECQPLPSS IKLSKVKNAFVHEISSVDSKYFHMHVTSCNSISIHNINLTAPANSPNTDGIHISHSDGVHVTSSKIGTGDDCVSIGQGSTNILISQVFCGPGHGLSVGSL GKYKNEEDVRGIVVTNCTLFNTTNGVRIKSYAASDPSQALNITFKDITMDSVKNPIIIDQKYACSCSVQPSRVKISNVHYQNIKGTSTSDVAVSFSCSSL VPCQGVEIVDIDLAYIGQKANIPLSASCLNAN |
Full Sequence |
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Protein Sequence Length: 415 Download |
MTIAGSILVL GLALLSCVAD GALRHHIGLS DRRSLVDGSG AAVTVFDVTK HGAKADDKTD 60 NAEAFIQTWR AACDSGAPAK MVIPGGTFLT SPVVFQGPCK STEPIVFEVQ GNVKATTDLS 120 EYSSEQWILF EIIDGLTLNG GGTFDGQGSA VWKYNDCHQN KECQPLPSSI KLSKVKNAFV 180 HEISSVDSKY FHMHVTSCNS ISIHNINLTA PANSPNTDGI HISHSDGVHV TSSKIGTGDD 240 CVSIGQGSTN ILISQVFCGP GHGLSVGSLG KYKNEEDVRG IVVTNCTLFN TTNGVRIKSY 300 AASDPSQALN ITFKDITMDS VKNPIIIDQK YACSCSVQPS RVKISNVHYQ NIKGTSTSDV 360 AVSFSCSSLV PCQGVEIVDI DLAYIGQKAN IPLSASCLNA NIVKSGGKQN PGCN* 420 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-86 | 45 | 382 | 347 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 5.0e-88 | 19 | 414 | 404 | + polygalacturonase ADPG | ||
PLN02155 | PLN02155 | 2.0e-91 | 34 | 400 | 371 | + polygalacturonase | ||
pfam00295 | Glyco_hydro_28 | 5.0e-98 | 73 | 397 | 330 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02188 | PLN02188 | 1.0e-135 | 40 | 411 | 378 | + polygalacturonase/glycoside hydrolase family protein |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI36886.1 | 0 | 3 | 413 | 8 | 414 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002268540.1 | 0 | 3 | 413 | 8 | 410 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002301488.1 | 0 | 63 | 414 | 2 | 353 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002301489.1 | 0 | 1 | 414 | 1 | 413 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002336609.1 | 0 | 64 | 382 | 1 | 318 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1bhe_A | 7e-17 | 140 | 331 | 115 | 314 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
PDB | 1rmg_A | 9e-17 | 47 | 380 | 22 | 336 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_B | 3e-16 | 136 | 397 | 74 | 339 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ib4_A | 3e-16 | 136 | 397 | 74 | 339 | A Chain A, Rhamnogalacturonase A From Aspergillus Aculeatus |
PDB | 1ia5_A | 3e-16 | 136 | 397 | 74 | 339 | A Chain A, Polygalacturonase From Aspergillus Aculeatus |