| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.002G202500.2 |
| Family | CE8 |
| Protein Properties | Length: 515 Molecular Weight: 56842.3 Isoelectric Point: 10.2965 |
| Chromosome | Chromosome/Scaffold: 02 Start: 16448849 End: 16453162 |
| Description | pectin methylesterase PCR fragment F |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CE8 | 247 | 357 | 1.1e-39 |
| LIVAKDGTGNFTTISEAVRAAPNSSDTRFVIHIKAGAYFENVEVERKKKMLVFIGDGIGKTVVKANRSVVDGWTTFRSATVAVVGDGFIAKGITFENSAG PSKHQAVALRS | |||
| CE8 | 357 | 498 | 3.64338e-44 |
| SAVVFQNSNLYARKPNSNQKNIFTAQGREDPNQNTGISILNCKVAAAADLIPVKSSFQTFLGRPWKEYSRTVFLRSYIDDLVDPAGWLEWNASFALSTLY YREYMNRGPGSNTSARVTWPGYRIITNSTEASQFTVGAFIQG | |||
| Full Sequence |
|---|
| Protein Sequence Length: 515 Download |
| MYPTRGRTKH LLFLLPISIL VITLLSFKRP AKFSSKTIEI PRLHIHKHIQ IAHSACKGTL 60 YPELCVSTLV SLPDLASKSL QEFISATLNK TMDEVRASSA DCNAIRNKMK LGPLEKVALK 120 DCIELFDDTI AELKSAISNL ALRKPTSKHY HDLQTLLSGA MTNQYTCLDG FARSKGKVRK 180 AIKKGLYNIS HHVSNSLAML KKIPGVNASK SEVFPEYGNV KHGFPSWLST KDRKLLQASA 240 NATKFDLIVA KDGTGNFTTI SEAVRAAPNS SDTRFVIHIK AGAYFENVEV ERKKKMLVFI 300 GDGIGKTVVK ANRSVVDGWT TFRSATVAVV GDGFIAKGIT FENSAGPSKH QAVALRSAVV 360 FQNSNLYARK PNSNQKNIFT AQGREDPNQN TGISILNCKV AAAADLIPVK SSFQTFLGRP 420 WKEYSRTVFL RSYIDDLVDP AGWLEWNASF ALSTLYYREY MNRGPGSNTS ARVTWPGYRI 480 ITNSTEASQF TVGAFIQGNT WLNSTDIPYF LNLN* |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
 | ||||||||
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02313 | PLN02313 | 2.0e-155 | 51 | 513 | 529 | + Pectinesterase/pectinesterase inhibitor | ||
| PLN02484 | PLN02484 | 1.0e-155 | 3 | 514 | 569 | + probable pectinesterase/pectinesterase inhibitor | ||
| pfam01095 | Pectinesterase | 6.0e-156 | 246 | 499 | 298 | + Pectinesterase. | ||
| PLN02301 | PLN02301 | 2.0e-163 | 20 | 509 | 541 | + pectinesterase/pectinesterase inhibitor | ||
| PLN02933 | PLN02933 | 0 | 77 | 513 | 491 | + Probable pectinesterase/pectinesterase inhibitor | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0004857 | enzyme inhibitor activity |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| GenBank | ACQ85264.1 | 0 | 42 | 514 | 45 | 565 | pectin methylesterase [Musa acuminata AAA Group] |
| EMBL | CBI36883.1 | 0 | 7 | 488 | 17 | 499 | unnamed protein product [Vitis vinifera] |
| RefSeq | XP_002271665.1 | 0 | 1 | 513 | 1 | 563 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002301486.1 | 0 | 109 | 514 | 1 | 450 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002523113.1 | 0 | 39 | 514 | 36 | 557 | Pectinesterase-3 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 0 | 246 | 513 | 8 | 319 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 0 | 248 | 513 | 6 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.00001 | 227 | 407 | 14 | 204 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
