Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G001900.1 |
Family | CE8 |
Protein Properties | Length: 573 Molecular Weight: 62850.2 Isoelectric Point: 9.8938 |
Chromosome | Chromosome/Scaffold: 03 Start: 235196 End: 237296 |
Description | pectin methylesterase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 261 | 556 | 0 |
DVVVAADGSGKYRTVSAAVAAAPKHSAKRYIIKIKAGVYRENVEVPSEKTNIMFLGDGRKKTIITASRNVVDGGTTYHSATVAVVGQGFLARDITFQNTA GASKYQAVALRVESDFAAFYKCGMLAYQNTLYVHSNRQFFTNCYIAGTVDFIFGNSAAVFQDCDIRARRPNPGQTITITAQGRSDPNQNTGIVIQKSRIG ATADLQHARSNFSAYLGRPWKEYSRTVIMQSSISDVISPAGWREWKGRFALNTLHFAEYENSGAGAGTAGRVPWKGYKVITDTTEAQAFTARNFIT |
Full Sequence |
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Protein Sequence Length: 573 Download |
MTQAGQYISM SKKNKRLVLA IFASFLLVAT IIAIAIGVNS RKNPTKNDAA HALLMASCNS 60 TRYPDLCYSA ATSFPDASGG DPKAVILKNI NATIDAINSK KIKANRILST EDLTKQQKTA 120 LKDCRQNYDS SLADLEKVWG ALTRNPNNQL LQQQSYADQL TTQVTSCKTN EDSCLDGFSH 180 KWLSRKLRDI VRDPSEDDAG KMCSNTLALI KKLIEDTKAI ANRLKTTSRK LKEEDDSDEG 240 WPEWLSVTDR RLFLSSLLTP DVVVAADGSG KYRTVSAAVA AAPKHSAKRY IIKIKAGVYR 300 ENVEVPSEKT NIMFLGDGRK KTIITASRNV VDGGTTYHSA TVAVVGQGFL ARDITFQNTA 360 GASKYQAVAL RVESDFAAFY KCGMLAYQNT LYVHSNRQFF TNCYIAGTVD FIFGNSAAVF 420 QDCDIRARRP NPGQTITITA QGRSDPNQNT GIVIQKSRIG ATADLQHARS NFSAYLGRPW 480 KEYSRTVIMQ SSISDVISPA GWREWKGRFA LNTLHFAEYE NSGAGAGTAG RVPWKGYKVI 540 TDTTEAQAFT ARNFITGSSW LKSTTFPFSL GL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02484 | PLN02484 | 4.0e-146 | 8 | 572 | 581 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 4.0e-149 | 12 | 572 | 576 | + pectinesterase | ||
PLN02301 | PLN02301 | 2.0e-151 | 1 | 572 | 586 | + pectinesterase/pectinesterase inhibitor | ||
PLN02313 | PLN02313 | 0 | 12 | 572 | 576 | + Pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 261 | 558 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAC18726.1 | 0 | 1 | 572 | 1 | 574 | putative pectin methylesterase [Populus tremula x Populus tremuloides] |
EMBL | CAC18727.1 | 0 | 39 | 572 | 1 | 536 | putative pectin methylesterase [Populus tremula x Populus tremuloides] |
RefSeq | XP_002331120.1 | 0 | 10 | 572 | 1 | 563 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331121.1 | 0 | 1 | 572 | 1 | 572 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331123.1 | 0 | 1 | 572 | 1 | 573 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 255 | 572 | 2 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 258 | 572 | 1 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 1e-24 | 262 | 526 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 1e-24 | 262 | 526 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 1e-24 | 262 | 526 | 7 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |