Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G002600.1 |
Family | CE8 |
Protein Properties | Length: 473 Molecular Weight: 51621.5 Isoelectric Point: 10.0426 |
Chromosome | Chromosome/Scaffold: 03 Start: 288842 End: 290811 |
Description | pectin methylesterase 3 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 161 | 456 | 0 |
DVVVAADGSGKYRTVSAAVAAAPKHSAKRYIIKIKAGVYRENVEVPSEKTNIMFLGDGRKKTIITASRNVVDGGTTYHSATVAVVGQGFLARDITFQNTA GASKYQAVALRVESDFAAFYKCGMLAYQNTLYVHSNRQFFTNCYIAGTVDFIFGNSAAVFQDCDIHARRPNPGQTITITAQGRSDPNQNTGIVIQKSRIG ATADLQHARSNFSAYLGRPWKEYSRTVIMQSSISDVISPAGWREWKGRFALNTLHFAEYENSGVGAGTAGRVPWKGYKVITDATEAQAFTARNFIT |
Full Sequence |
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Protein Sequence Length: 473 Download |
MTQAGQYISM SKKNKRLVLA IFASFLLVAT IIAIAIGVNS RKNSTKNEAA HALLMASCNS 60 TRYPDLCYSA ATSFPDQASG DDPKTVILNN INKTIDAINS KKIRDDKILS TEDLTAQQKT 120 ALKLKTTSRK LKEEDDSAEG WPEWLSVTDR RLFQSSLLTP DVVVAADGSG KYRTVSAAVA 180 AAPKHSAKRY IIKIKAGVYR ENVEVPSEKT NIMFLGDGRK KTIITASRNV VDGGTTYHSA 240 TVAVVGQGFL ARDITFQNTA GASKYQAVAL RVESDFAAFY KCGMLAYQNT LYVHSNRQFF 300 TNCYIAGTVD FIFGNSAAVF QDCDIHARRP NPGQTITITA QGRSDPNQNT GIVIQKSRIG 360 ATADLQHARS NFSAYLGRPW KEYSRTVIMQ SSISDVISPA GWREWKGRFA LNTLHFAEYE 420 NSGVGAGTAG RVPWKGYKVI TDATEAQAFT ARNFITGSSW LKSTTFPFSL GL* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02313 | PLN02313 | 1.0e-10 | 12 | 139 | 139 | + Pectinesterase/pectinesterase inhibitor | ||
PLN02201 | PLN02201 | 6.0e-135 | 123 | 472 | 351 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 1.0e-148 | 112 | 472 | 365 | + pectinesterase/pectinesterase inhibitor | ||
PLN02313 | PLN02313 | 1.0e-176 | 117 | 472 | 358 | + Pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 161 | 458 | 298 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002331120.1 | 5.60519e-45 | 10 | 123 | 1 | 114 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331120.1 | 0 | 121 | 472 | 212 | 563 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331121.1 | 4.00001e-40 | 1 | 123 | 1 | 122 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331121.1 | 0 | 121 | 472 | 221 | 572 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331123.1 | 0 | 121 | 472 | 222 | 573 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 154 | 472 | 1 | 319 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 161 | 472 | 4 | 315 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 3e-25 | 162 | 447 | 7 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 3e-25 | 162 | 447 | 7 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 4e-25 | 162 | 447 | 7 | 327 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |