y
Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.003G022900.1 |
Family | GH3 |
Protein Properties | Length: 776 Molecular Weight: 83618 Isoelectric Point: 6.0615 |
Chromosome | Chromosome/Scaffold: 03 Start: 2731175 End: 2735944 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH3 | 88 | 337 | 0 |
NVSRLGIPKYEWWSEALHGVSYVGPGTHFSDDVAGATSFPQVILTAASFNTSLFEAIGKVVSTEARAMYNVGLAGLTFWSPNINIFRDPRWGRGQETPGE DPLLSSKYGSCYVKGLQQRDDGDPDKLKVAACCKHYTAYDLDNWKGSDRYHFNAVVTKQDMDDTFQPPFKSCVIDGNVASVMCSYNQVNGKPTCADPDLL SGVIRGEWNLNGYIVTDCDSLDVFYKSQNYTKTPEEAAAAAILAGVDLNC |
Full Sequence |
---|
Protein Sequence Length: 776 Download |
MAMASVSPQN SVPKVPVFLL FCMFLVFLST HVSAQSSPVF ACDVVSNPSL ASLGFCNTSI 60 GINDRVVDLV KRLTLQEKIV FLVNSAGNVS RLGIPKYEWW SEALHGVSYV GPGTHFSDDV 120 AGATSFPQVI LTAASFNTSL FEAIGKVVST EARAMYNVGL AGLTFWSPNI NIFRDPRWGR 180 GQETPGEDPL LSSKYGSCYV KGLQQRDDGD PDKLKVAACC KHYTAYDLDN WKGSDRYHFN 240 AVVTKQDMDD TFQPPFKSCV IDGNVASVMC SYNQVNGKPT CADPDLLSGV IRGEWNLNGY 300 IVTDCDSLDV FYKSQNYTKT PEEAAAAAIL AGVDLNCGSF LGQHTEAAVK GGLVNEHAID 360 IAVSNNFATL MRLGFFDGDP SKQLYGKLGP KDVCTAENQE LAREAARQGI VLLKNTAGSL 420 PLSPTAIKNL AVIGPNANVT KTMIGNYEGT PCKYTTPLQG LAASVATTYL PGCSNVACST 480 AQVDDAKKLA AAADATVLVM GADLSIEAES RDRVDVLLPG QQQLLITAVA NVSCGPVILV 540 IMSGGGMDVS FARTNDKITS ILWVGYPGEA GGAAIADIIF GYYNPSGRLP MTWYPQSYVD 600 KVPMTNMNMR PDPSNGYPGR TYRFYTGETV YSFGDGLSYS QFTHELIQAP QLVYVPLEES 660 HVCHSSECQS VVASEQTCQN STFDMLLRVK NEGTISGSHT VFLFSSPPAV HNSPQKHLVG 720 FEKVFLNAQT GRHVRFKVDI CKDLSVVDEL GSKKVALGEH VLHVGSLKHF LSVRI* 780 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 4.0e-42 | 410 | 640 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 1.0e-55 | 90 | 474 | 391 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
PRK15098 | PRK15098 | 2.0e-60 | 41 | 740 | 787 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 1.0e-60 | 73 | 365 | 300 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PLN03080 | PLN03080 | 0 | 30 | 775 | 767 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
---|---|
GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAJ65921.1 | 0 | 1 | 681 | 1 | 704 | xylan 1,4-beta-xylosidase [Populus alba x Populus tremula] |
EMBL | CAJ65922.1 | 0 | 3 | 775 | 1 | 757 | xylan 1,4-beta-xylosidase [Populus alba x Populus tremula] |
RefSeq | XP_002298197.1 | 0 | 37 | 775 | 1 | 741 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303181.1 | 0 | 3 | 775 | 1 | 773 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513707.1 | 0 | 31 | 775 | 32 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 124 | 765 | 91 | 722 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3u48_A | 0 | 124 | 765 | 91 | 722 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3u4a_B | 0 | 124 | 765 | 91 | 722 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3u4a_A | 0 | 124 | 765 | 91 | 722 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2x41_A | 6e-37 | 64 | 644 | 2 | 605 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |