Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G022900.2 |
Family | GH3 |
Protein Properties | Length: 636 Molecular Weight: 68795 Isoelectric Point: 6.1555 |
Chromosome | Chromosome/Scaffold: 03 Start: 2732471 End: 2735944 |
Description | beta-D-xylosidase 4 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 6 | 197 | 0 |
KVVSTEARAMYNVGLAGLTFWSPNINIFRDPRWGRGQETPGEDPLLSSKYGSCYVKGLQQRDDGDPDKLKVAACCKHYTAYDLDNWKGSDRYHFNAVVTK QDMDDTFQPPFKSCVIDGNVASVMCSYNQVNGKPTCADPDLLSGVIRGEWNLNGYIVTDCDSLDVFYKSQNYTKTPEEAAAAAILAGVDLNC |
Full Sequence |
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Protein Sequence Length: 636 Download |
METKRKVVST EARAMYNVGL AGLTFWSPNI NIFRDPRWGR GQETPGEDPL LSSKYGSCYV 60 KGLQQRDDGD PDKLKVAACC KHYTAYDLDN WKGSDRYHFN AVVTKQDMDD TFQPPFKSCV 120 IDGNVASVMC SYNQVNGKPT CADPDLLSGV IRGEWNLNGY IVTDCDSLDV FYKSQNYTKT 180 PEEAAAAAIL AGVDLNCGSF LGQHTEAAVK GGLVNEHAID IAVSNNFATL MRLGFFDGDP 240 SKQLYGKLGP KDVCTAENQE LAREAARQGI VLLKNTAGSL PLSPTAIKNL AVIGPNANVT 300 KTMIGNYEGT PCKYTTPLQG LAASVATTYL PGCSNVACST AQVDDAKKLA AAADATVLVM 360 GADLSIEAES RDRVDVLLPG QQQLLITAVA NVSCGPVILV IMSGGGMDVS FARTNDKITS 420 ILWVGYPGEA GGAAIADIIF GYYNPSGRLP MTWYPQSYVD KVPMTNMNMR PDPSNGYPGR 480 TYRFYTGETV YSFGDGLSYS QFTHELIQAP QLVYVPLEES HVCHSSECQS VVASEQTCQN 540 STFDMLLRVK NEGTISGSHT VFLFSSPPAV HNSPQKHLVG FEKVFLNAQT GRHVRFKVDI 600 CKDLSVVDEL GSKKVALGEH VLHVGSLKHF LSVRI* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam01915 | Glyco_hydro_3_C | 3.0e-43 | 270 | 500 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. | ||
COG1472 | BglX | 6.0e-47 | 6 | 334 | 335 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
pfam00933 | Glyco_hydro_3 | 2.0e-47 | 6 | 225 | 224 | + Glycosyl hydrolase family 3 N terminal domain. | ||
PRK15098 | PRK15098 | 1.0e-55 | 26 | 600 | 618 | + beta-D-glucoside glucohydrolase; Provisional | ||
PLN03080 | PLN03080 | 0 | 8 | 635 | 648 | + Probable beta-xylosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI39114.1 | 0 | 1 | 635 | 140 | 774 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002264183.1 | 0 | 1 | 635 | 332 | 966 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002298197.1 | 0 | 6 | 635 | 110 | 741 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303181.1 | 0 | 1 | 635 | 139 | 773 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513707.1 | 0 | 1 | 635 | 142 | 777 | Beta-glucosidase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3u48_B | 0 | 26 | 625 | 128 | 722 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3u48_A | 0 | 26 | 625 | 128 | 722 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3u4a_B | 0 | 26 | 625 | 128 | 722 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3u4a_A | 0 | 26 | 625 | 128 | 722 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2x41_A | 3e-29 | 27 | 504 | 117 | 605 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.37-RXN | EC-3.2.1.37 | xylan 1,4-β-xylosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
EX688471 | 278 | 42 | 319 | 0 |
EL371570 | 285 | 23 | 307 | 0 |
DT556104 | 292 | 91 | 382 | 0 |
HO799547 | 321 | 67 | 387 | 0 |
HO798199 | 392 | 246 | 628 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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