Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G072700.1 |
Family | CE8 |
Protein Properties | Length: 589 Molecular Weight: 64734.8 Isoelectric Point: 8.1282 |
Chromosome | Chromosome/Scaffold: 03 Start: 10154792 End: 10158097 |
Description | pectin methylesterase 1 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 281 | 573 | 0 |
NVTVAKDGSGDCETLREAVGKIPKKSESKFIIHVKEGVYVENVILDKSKWNVMIYGEGKDKTIVSGSLNFVDGTPTFSTPTFAVAGKGFFARDMKFINTA GAEKHQAVAFRSGSDMSVFYRCAFDAFQDTLYAHSNRQFYRDCDITGTIDFIFGNAAVVFQNCNIQPRQPLANQFNTITAQGKKDPNQNTGISIQKCKFS AFDNVTAPTYLGRPWKDYSTTVIMQSDIGSFLRPLGWISWVSGVDPPATIFYAEYQNTGSGANVDGRVKWTGYKPALTVDEAGKFAVDSFIQG |
Full Sequence |
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Protein Sequence Length: 589 Download |
MDSINSFKGY GKVDEAEQQA FRKKSRKRLI IIVVSSIVLL AVIIGAVIGA VVHKRNNKSS 60 SNPVPPPELT PATSLKAVCS VTQYPASCFS SISALETGNT TDPEVLFKLS LRVAMNELSK 120 LKDYPDKLIQ SIKDTTLQGA LKVCATVFDD AVDRLNDSIS SMAIGEGEQI LSPAKMNDLK 180 TWLSATITDQ ETCLDALQEL STTKHFNQTL VDQVKTAMEN STEFVSNSLA IVAKILGLLS 240 DFKIPIHRRL LGFERSHISE FPQWVSFGDR RLLQESKPTP NVTVAKDGSG DCETLREAVG 300 KIPKKSESKF IIHVKEGVYV ENVILDKSKW NVMIYGEGKD KTIVSGSLNF VDGTPTFSTP 360 TFAVAGKGFF ARDMKFINTA GAEKHQAVAF RSGSDMSVFY RCAFDAFQDT LYAHSNRQFY 420 RDCDITGTID FIFGNAAVVF QNCNIQPRQP LANQFNTITA QGKKDPNQNT GISIQKCKFS 480 AFDNVTAPTY LGRPWKDYST TVIMQSDIGS FLRPLGWISW VSGVDPPATI FYAEYQNTGS 540 GANVDGRVKW TGYKPALTVD EAGKFAVDSF IQGSEWLPKT SVTFQSML* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02484 | PLN02484 | 3.0e-154 | 71 | 588 | 530 | + probable pectinesterase/pectinesterase inhibitor | ||
PLN02301 | PLN02301 | 4.0e-155 | 69 | 588 | 531 | + pectinesterase/pectinesterase inhibitor | ||
PLN02314 | PLN02314 | 0 | 1 | 588 | 588 | + pectinesterase | ||
PLN02468 | PLN02468 | 0 | 7 | 588 | 589 | + putative pectinesterase/pectinesterase inhibitor | ||
pfam01095 | Pectinesterase | 0 | 281 | 574 | 299 | + Pectinesterase. |
Gene Ontology | |
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GO Term | Description |
GO:0004857 | enzyme inhibitor activity |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAM65650.1 | 0 | 1 | 585 | 1 | 584 | pectinesterase, putative [Arabidopsis thaliana] |
RefSeq | NP_175787.1 | 0 | 1 | 585 | 1 | 584 | ATPME1; pectinesterase [Arabidopsis thaliana] |
RefSeq | XP_002265217.1 | 0 | 1 | 588 | 1 | 578 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002304256.1 | 0 | 1 | 588 | 1 | 588 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532945.1 | 0 | 1 | 588 | 1 | 589 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 274 | 584 | 1 | 315 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 281 | 584 | 4 | 311 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 5e-16 | 281 | 500 | 32 | 274 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_B | 8e-16 | 279 | 544 | 3 | 313 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 2ntq_A | 8e-16 | 279 | 544 | 3 | 313 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |