Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G076900.2 |
Family | CE8 |
Protein Properties | Length: 368 Molecular Weight: 40759.8 Isoelectric Point: 8.3208 |
Chromosome | Chromosome/Scaffold: 03 Start: 10534418 End: 10537457 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 66 | 357 | 0 |
ITVDVNGAGEFLSVQAAVDAVPENNGENVMILISAGYYIEKVTVPASKPYITFQGEGRDVTIIEWHDRASDRGANGQQLRTYRTASVSVFANYFSARNIS FKNTAPAPMPGMKGWQAAAFRISGDKAYFAGCGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHSIATRFGSIAAQDRNSPDEKTGFA FLNCRVTGTGPLYVGRAMGQYSRIVYSYTYFDNVVAHGGWDDWDHASNKNKTVFFGVYKCWGPGAAAVQGVSWARELDYESAHKFLAKSFVN |
Full Sequence |
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Protein Sequence Length: 368 Download |
MASLGYSFLF FYSYFILTLF LLHAPLLVTS STYRYKVESS SINRTAPTNS TKHHHKWVGP 60 VGYRVITVDV NGAGEFLSVQ AAVDAVPENN GENVMILISA GYYIEKVTVP ASKPYITFQG 120 EGRDVTIIEW HDRASDRGAN GQQLRTYRTA SVSVFANYFS ARNISFKNTA PAPMPGMKGW 180 QAAAFRISGD KAYFAGCGFY GAQDTLCDDA GRHYFKECYI EGSIDFIFGN GRSMYKDCEL 240 HSIATRFGSI AAQDRNSPDE KTGFAFLNCR VTGTGPLYVG RAMGQYSRIV YSYTYFDNVV 300 AHGGWDDWDH ASNKNKTVFF GVYKCWGPGA AAVQGVSWAR ELDYESAHKF LAKSFVNGRH 360 WIAPSDA* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02665 | PLN02665 | 2.0e-102 | 64 | 364 | 303 | + pectinesterase family protein | ||
PLN02304 | PLN02304 | 1.0e-107 | 65 | 367 | 311 | + probable pectinesterase | ||
PLN02671 | PLN02671 | 9.0e-114 | 62 | 362 | 303 | + pectinesterase | ||
PLN02682 | PLN02682 | 5.0e-137 | 26 | 364 | 356 | + pectinesterase family protein | ||
PLN02634 | PLN02634 | 0 | 26 | 367 | 343 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABD65006.1 | 0 | 27 | 367 | 1 | 344 | pectinesterase family protein [Brassica oleracea] |
EMBL | CBI31927.1 | 0 | 11 | 367 | 4 | 349 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_199561.1 | 0 | 1 | 367 | 1 | 362 | pectinesterase family protein [Arabidopsis thaliana] |
RefSeq | XP_002266321.1 | 0 | 48 | 367 | 37 | 356 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002303355.1 | 0 | 51 | 364 | 1 | 314 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 4.06377e-44 | 66 | 362 | 9 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 9e-32 | 71 | 362 | 10 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 3uw0_A | 1e-19 | 58 | 350 | 26 | 352 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
PDB | 1qjv_B | 2e-17 | 65 | 331 | 7 | 312 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 2e-17 | 65 | 331 | 7 | 312 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |