| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.003G085500.1 |
| Family | GH14 |
| Protein Properties | Length: 549 Molecular Weight: 61151.2 Isoelectric Point: 8.2498 |
| Chromosome | Chromosome/Scaffold: 03 Start: 11250830 End: 11254292 |
| Description | chloroplast beta-amylase |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 89 | 503 | 0 |
| FVMLPLDTVTIGGNLNKPRAMNASLMALRSAGVEGVMVDAWWGLVEKDGPLKYNWEGYAELVQMVQKHGLKLQVVMSFHQCGGNVGDSCSIPLPPWVLEE MSKNLDLVYTDKSGRRNPEYISLGCDSLPLLRGRTPIQVYSDYMRSFRNRFKDYLGQVITEIQVGMGPCGELRYPAYPESKGTWNFPGIGEFQCYDKYMR ASLEASAEAVGKTGWGQRGPHDSGQYNQFPEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDKILAAAEGIFRGTGAKLSGKVAGIHWHYGTRSHAAEL TAGYYNTRHHDGYLPMARMFSKHGVVFNFTCMEMRDGEQPQHANCSPEGLVRQVKMATRTARTELAGENALERYDAGAFSQVMATSRSESGNGLTAFTYL RMNKRLFEGDNWLHL | |||
| Full Sequence |
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| Protein Sequence Length: 549 Download |
| MTITLRSSTS FISLRHTRSL KTPDGFSGTV CFAQIKPSCR LQAKNSKQEA QLSQDDILVT 60 EGRKSKNWEK LHAISGPDHS SSNSRVPVFV MLPLDTVTIG GNLNKPRAMN ASLMALRSAG 120 VEGVMVDAWW GLVEKDGPLK YNWEGYAELV QMVQKHGLKL QVVMSFHQCG GNVGDSCSIP 180 LPPWVLEEMS KNLDLVYTDK SGRRNPEYIS LGCDSLPLLR GRTPIQVYSD YMRSFRNRFK 240 DYLGQVITEI QVGMGPCGEL RYPAYPESKG TWNFPGIGEF QCYDKYMRAS LEASAEAVGK 300 TGWGQRGPHD SGQYNQFPEE TGFFRRDGTW NTEYGQFFLE WYSGKLLEHG DKILAAAEGI 360 FRGTGAKLSG KVAGIHWHYG TRSHAAELTA GYYNTRHHDG YLPMARMFSK HGVVFNFTCM 420 EMRDGEQPQH ANCSPEGLVR QVKMATRTAR TELAGENALE RYDAGAFSQV MATSRSESGN 480 GLTAFTYLRM NKRLFEGDNW LHLVQFVESM SEGGRHGKLS ECDSSGTNLY VGFIKDKSVQ 540 KTTEVALA* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02161 | PLN02161 | 9.0e-146 | 80 | 511 | 443 | + beta-amylase | ||
| pfam01373 | Glyco_hydro_14 | 4.0e-176 | 89 | 506 | 431 | + Glycosyl hydrolase family 14. This family are beta amylases. | ||
| PLN02803 | PLN02803 | 0 | 1 | 548 | 549 | + beta-amylase | ||
| PLN00197 | PLN00197 | 0 | 86 | 513 | 434 | + beta-amylase; Provisional | ||
| PLN02801 | PLN02801 | 0 | 86 | 510 | 433 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN62440.1 | 0 | 1 | 548 | 1 | 543 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002282871.1 | 0 | 1 | 548 | 1 | 543 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002326690.1 | 0 | 1 | 548 | 1 | 547 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002329547.1 | 0 | 1 | 548 | 1 | 548 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002517513.1 | 0 | 1 | 547 | 1 | 546 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdp_A | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Medicago Truncatula Ugt85h2- Insights Into The Structural Basis Of A Multifunctional (Iso) Flavonoid Glycosyltransferase |
| PDB | 1q6c_A | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1bfn_A | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose |
| PDB | 1ukp_D | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| PDB | 1ukp_C | 0 | 86 | 510 | 12 | 441 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| HO794833 | 412 | 124 | 535 | 0 |
| BU103692 | 542 | 1 | 541 | 0 |
| HO781538 | 404 | 30 | 433 | 0 |
| HO825836 | 390 | 160 | 548 | 0 |
| CK293967 | 311 | 160 | 470 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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