| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.003G106500.1 |
| Family | GH14 |
| Protein Properties | Length: 702 Molecular Weight: 79257.3 Isoelectric Point: 6.7863 |
| Chromosome | Chromosome/Scaffold: 03 Start: 13060950 End: 13067154 |
| Description | beta-amylase 2 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 242 | 638 | 0 |
| YVMLANGFINNCCQLIDPQGVRQELSHMKSLDVDGVVVECWWGVVEAWSPQKYAWSGYRELFNIIQEFKLKLQVVMAFHEYGGTDSGDVLISLPQWVLEI GKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDFMRSFRTEFNDLFTEGLITAIEIGLGPSGELKYPSFSERIGWRYPGIGEFQCYDKYSQ QNLRKAAKLRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYFGRFFLHWYSQSLIDHADNVLSLASFAFEDTKIIIKVPAVYWWYRTASHAAELTAG YYNPTNQDGYSPVFEVLKKHSVIMKFVCSGLPLSGFENDEALVDPEGLSWQILNSAWDRGLTVAGVNMLACYDREGYRRVVEMAKPRNDPDHHHFSF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 702 Download |
| MNTNNSNQDL LINPQQTQIP QPDPYSHLPH PVQPGPSPHP HPQTRRPRGF AATAAAAASA 60 DNTSAVSSPN ASGKGKRERE KEKERTKLRE RHRRAITSRM LTGLRQYGNF PLPARADMND 120 VLAALAREAG WTVETDGTTY RQSPPPSHTG SFGVRPVESP LLKNCAVKEC QPSVLRIDES 180 LSPGSLDSMV ISERENSRNE KYTSTSPINS VIECLDADQL IQDVHSGMHQ NDFTENSYVP 240 VYVMLANGFI NNCCQLIDPQ GVRQELSHMK SLDVDGVVVE CWWGVVEAWS PQKYAWSGYR 300 ELFNIIQEFK LKLQVVMAFH EYGGTDSGDV LISLPQWVLE IGKDNQDIFF TDREGRRNTE 360 CLSWGIDKER VLKGRTGIEV YFDFMRSFRT EFNDLFTEGL ITAIEIGLGP SGELKYPSFS 420 ERIGWRYPGI GEFQCYDKYS QQNLRKAAKL RGHSFWARGP DNAGQYNSRP HETGFFCERG 480 DYDSYFGRFF LHWYSQSLID HADNVLSLAS FAFEDTKIII KVPAVYWWYR TASHAAELTA 540 GYYNPTNQDG YSPVFEVLKK HSVIMKFVCS GLPLSGFEND EALVDPEGLS WQILNSAWDR 600 GLTVAGVNML ACYDREGYRR VVEMAKPRND PDHHHFSFFV YQQPSALAQG TICFPELDYF 660 IKCMHGKKSK AITVAQKLSQ WGGQTVHCKK VASLYLLPPS M* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00197 | PLN00197 | 2.0e-93 | 239 | 623 | 391 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 1.0e-111 | 224 | 626 | 407 | + beta-amylase | ||
| PLN02801 | PLN02801 | 7.0e-135 | 237 | 665 | 436 | + beta-amylase | ||
| PLN02705 | PLN02705 | 0 | 1 | 673 | 691 | + beta-amylase | ||
| PLN02905 | PLN02905 | 0 | 95 | 667 | 606 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI29216.1 | 0 | 86 | 667 | 19 | 605 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_199343.1 | 0 | 17 | 666 | 14 | 682 | BMY2 (BETA-AMYLASE 2); beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
| RefSeq | XP_002270680.1 | 0 | 79 | 667 | 70 | 663 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002304400.1 | 0 | 1 | 701 | 1 | 701 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519919.1 | 0 | 3 | 667 | 2 | 665 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdq_A | 0 | 237 | 628 | 10 | 401 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| PDB | 1v3i_A | 0 | 237 | 628 | 10 | 401 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1wds_A | 0 | 237 | 628 | 10 | 401 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase |
| PDB | 1btc_A | 0 | 237 | 628 | 6 | 397 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
| PDB | 1byd_A | 0 | 237 | 628 | 10 | 401 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
|---|
 |
| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB439624 | 282 | 288 | 569 | 0 |
| JG649066 | 271 | 288 | 558 | 0 |
| HO807244 | 278 | 390 | 667 | 0 |
| FD502730 | 231 | 328 | 558 | 0 |
| EY757606 | 286 | 288 | 573 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
|---|
 |
