| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.003G106500.3 |
| Family | GH14 |
| Protein Properties | Length: 676 Molecular Weight: 76390.7 Isoelectric Point: 6.0937 |
| Chromosome | Chromosome/Scaffold: 03 Start: 13060023 End: 13067098 |
| Description | beta-amylase 2 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 242 | 639 | 0 |
| YVMLAQNGFINNCCQLIDPQGVRQELSHMKSLDVDGVVVECWWGVVEAWSPQKYAWSGYRELFNIIQEFKLKLQVVMAFHEYGGTDSGDVLISLPQWVLE IGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDFMRSFRTEFNDLFTEGLITAIEIGLGPSGELKYPSFSERIGWRYPGIGEFQCYDKYS QQNLRKAAKLRGHSFWARGPDNAGQYNSRPHETGFFCERGDYDSYFGRFFLHWYSQSLIDHADNVLSLASFAFEDTKIIIKVPAVYWWYRTASHAAELTA GYYNPTNQDGYSPVFEVLKKHSVIMKFVCSGLPLSGFENDEALVDPEGLSWQILNSAWDRGLTVAGVNMLACYDREGYRRVVEMAKPRNDPDHHHFSF | |||
| Full Sequence |
|---|
| Protein Sequence Length: 676 Download |
| MNTNNSNQDL LINPQQTQIP QPDPYSHLPH PVQPGPSPHP HPQTRRPRGF AATAAAAASA 60 DNTSAVSSPN ASGKGKRERE KEKERTKLRE RHRRAITSRM LTGLRQYGNF PLPARADMND 120 VLAALAREAG WTVETDGTTY RQSPPPSHTG SFGVRPVESP LLKNCAVKEC QPSVLRIDES 180 LSPGSLDSMV ISERENSRNE KYTSTSPINS VIECLDADQL IQDVHSGMHQ NDFTENSYVP 240 VYVMLAQNGF INNCCQLIDP QGVRQELSHM KSLDVDGVVV ECWWGVVEAW SPQKYAWSGY 300 RELFNIIQEF KLKLQVVMAF HEYGGTDSGD VLISLPQWVL EIGKDNQDIF FTDREGRRNT 360 ECLSWGIDKE RVLKGRTGIE VYFDFMRSFR TEFNDLFTEG LITAIEIGLG PSGELKYPSF 420 SERIGWRYPG IGEFQCYDKY SQQNLRKAAK LRGHSFWARG PDNAGQYNSR PHETGFFCER 480 GDYDSYFGRF FLHWYSQSLI DHADNVLSLA SFAFEDTKII IKVPAVYWWY RTASHAAELT 540 AGYYNPTNQD GYSPVFEVLK KHSVIMKFVC SGLPLSGFEN DEALVDPEGL SWQILNSAWD 600 RGLTVAGVNM LACYDREGYR RVVEMAKPRN DPDHHHFSFF VYQQPSALAQ GTICFPELDY 660 FIKCMHGEIT GDLVS* 720 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN00197 | PLN00197 | 3.0e-93 | 239 | 624 | 393 | + beta-amylase; Provisional | ||
| PLN02803 | PLN02803 | 6.0e-111 | 224 | 627 | 408 | + beta-amylase | ||
| PLN02801 | PLN02801 | 9.0e-134 | 237 | 668 | 439 | + beta-amylase | ||
| PLN02705 | PLN02705 | 0 | 1 | 673 | 691 | + beta-amylase | ||
| PLN02905 | PLN02905 | 0 | 95 | 673 | 612 | + beta-amylase | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI29216.1 | 0 | 86 | 673 | 19 | 610 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_199343.1 | 0 | 17 | 669 | 14 | 684 | BMY2 (BETA-AMYLASE 2); beta-amylase/ catalytic/ cation binding [Arabidopsis thaliana] |
| RefSeq | XP_002270680.1 | 0 | 79 | 673 | 70 | 668 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002304400.1 | 0 | 1 | 668 | 1 | 667 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002519919.1 | 0 | 3 | 668 | 2 | 665 | Beta-amylase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1wdq_A | 0 | 237 | 629 | 10 | 401 | A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase |
| PDB | 1v3i_A | 0 | 237 | 629 | 10 | 401 | A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase |
| PDB | 1q6g_A | 0 | 237 | 629 | 10 | 401 | A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum |
| PDB | 1btc_A | 0 | 237 | 629 | 6 | 397 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
| PDB | 1byd_A | 0 | 237 | 629 | 10 | 401 | A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodext |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| EB439624 | 282 | 289 | 570 | 0 |
| JG649066 | 271 | 289 | 559 | 0 |
| HO807244 | 278 | 391 | 668 | 0 |
| FD502730 | 231 | 329 | 559 | 0 |
| EY757606 | 286 | 289 | 574 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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