y
Basic Information | |
---|---|
Species | Populus trichocarpa |
Cazyme ID | Potri.003G112600.3 |
Family | GH32 |
Protein Properties | Length: 471 Molecular Weight: 52078.7 Isoelectric Point: 5.2188 |
Chromosome | Chromosome/Scaffold: 03 Start: 13621963 End: 13627265 |
Description | Glycosyl hydrolases family 32 protein |
View CDS |
External Links |
---|
NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
---|---|---|---|
Family | Start | End | Evalue |
GH32 | 3 | 262 | 0 |
ADKWYDKNGVWTGSATILPDGKIVMLYTGSTNESVQVQNLAYPADHDDPLLLKWVKYSGNPVLVPPPGIGAKDFRDPTTAWKTSEGKWRIIIGSKINKTG IALVYDTEDFINYELLSGILHGVPKTGMWECVDFYPVSKTGQNGLDTSVNGPQVKHVIKTSLDDDRHDYYALGTYADKVGKWYPDNPEIDVGIGIRYDYG IFYASKTFYDQSKGRRVLWGWIGESDSEVADVKKGWASLQGIPRTVVLDTKTGSNLLQWP |
Full Sequence |
---|
Protein Sequence Length: 471 Download |
MVADKWYDKN GVWTGSATIL PDGKIVMLYT GSTNESVQVQ NLAYPADHDD PLLLKWVKYS 60 GNPVLVPPPG IGAKDFRDPT TAWKTSEGKW RIIIGSKINK TGIALVYDTE DFINYELLSG 120 ILHGVPKTGM WECVDFYPVS KTGQNGLDTS VNGPQVKHVI KTSLDDDRHD YYALGTYADK 180 VGKWYPDNPE IDVGIGIRYD YGIFYASKTF YDQSKGRRVL WGWIGESDSE VADVKKGWAS 240 LQGIPRTVVL DTKTGSNLLQ WPVEEVESLR LKSKNFNNIE VKAGSAVPLE LDGATQLDIV 300 AEFELDRKAI ERTAESNVEF SCSTNGGASH RGALGPFGLL VLADDDLTEY TPVYFFVAKG 360 NNGSLKTFFC TDQSRSSVAN DVRKEIYGSY VPVLEGEKLS VRILVDHSII ESFAQGGRTC 420 ITSRVYPTRA IYGSARLFLF NNATEAGVTS SLKIWNMNSA FIRPYSNEQQ * 480 |
Functional Domains Download unfiltered results here | ||||||||
---|---|---|---|---|---|---|---|---|
Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
TIGR01322 | scrB_fam | 3.0e-30 | 4 | 427 | 436 | + sucrose-6-phosphate hydrolase. [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
COG1621 | SacC | 5.0e-46 | 4 | 429 | 435 | + Beta-fructosidases (levanase/invertase) [Carbohydrate transport and metabolism] | ||
cd08996 | GH32_B_Fructosidase | 1.0e-62 | 4 | 265 | 268 | + Glycosyl hydrolase family 32, beta-fructosidases. Glycosyl hydrolase family GH32 cleaves sucrose into fructose and glucose via beta-fructofuranosidase activity, producing invert sugar that is a mixture of dextrorotatory D-glucose and levorotatory D-fructose, thus named invertase (EC 3.2.1.26). This family also contains other fructofuranosidases such as inulinase (EC 3.2.1.7), exo-inulinase (EC 3.2.1.80), levanase (EC 3.2.1.65), and transfructosidases such sucrose:sucrose 1-fructosyltransferase (EC 2.4.1.99), fructan:fructan 1-fructosyltransferase (EC 2.4.1.100), sucrose:fructan 6-fructosyltransferase (EC 2.4.1.10), fructan:fructan 6G-fructosyltransferase (EC 2.4.1.243) and levan fructosyltransferases (EC 2.4.1.-). These retaining enzymes (i.e. they retain the configuration at anomeric carbon atom of the substrate) catalyze hydrolysis in two steps involving a covalent glycosyl enzyme intermediate: an aspartate located close to the N-terminus acts as the catalytic nucleophile and a glutamate acts as the general acid/base; a conserved aspartate residue in the Arg-Asp-Pro (RDP) motif stabilizes the transition state. These enzymes are predicted to display a 5-fold beta-propeller fold as found for GH43 and CH68. The breakdown of sucrose is widely used as a carbon or energy source by bacteria, fungi, and plants. Invertase is used commercially in the confectionery industry, since fructose has a sweeter taste than sucrose and a lower tendency to crystallize. A common structural feature of all these enzymes is a 5-bladed beta-propeller domain, similar to GH43, that contains the catalytic acid and catalytic base. A long V-shaped groove, partially enclosed at one end, forms a single extended substrate-binding surface across the face of the propeller. | ||
pfam00251 | Glyco_hydro_32N | 4.0e-106 | 1 | 262 | 270 | + Glycosyl hydrolases family 32 N-terminal domain. This domain corresponds to the N-terminal domain of glycosyl hydrolase family 32 which forms a five bladed beta propeller structure. | ||
smart00640 | Glyco_32 | 3.0e-145 | 1 | 417 | 427 | + Glycosyl hydrolases family 32. |
Annotations - NR Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
DDBJ | BAB82419.1 | 0 | 1 | 468 | 180 | 647 | acid invertase [Citrus unshiu] |
DDBJ | BAF34362.1 | 0 | 1 | 468 | 180 | 647 | beta-fructofuranosidase [Citrus sinensis] |
RefSeq | XP_002303519.1 | 0 | 1 | 470 | 193 | 662 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303584.1 | 0 | 1 | 469 | 67 | 534 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002532576.1 | 0 | 1 | 467 | 181 | 647 | Acid beta-fructofuranosidase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3ugh_B | 0 | 1 | 465 | 80 | 544 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
PDB | 3ugh_A | 0 | 1 | 465 | 80 | 544 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
PDB | 3ugg_B | 0 | 1 | 465 | 80 | 544 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
PDB | 3ugg_A | 0 | 1 | 465 | 80 | 544 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
PDB | 3ugf_B | 0 | 1 | 465 | 80 | 544 | A Chain A, Crystal Structure Of A 6-Sst6-Sft From Pachysandra Terminalis |
Metabolic Pathways | |||
---|---|---|---|
Pathway Name | Reaction | EC | Protein Name |
sucrose degradation III | RXN-1461 | EC-3.2.1.26 | β-fructofuranosidase |
EST Download unfiltered results here | ||||
---|---|---|---|---|
Hit | Length | Start | End | EValue |
BU878522 | 230 | 211 | 440 | 0 |
FC925873 | 277 | 159 | 435 | 0 |
EY817233 | 275 | 38 | 312 | 0 |
HO797746 | 291 | 175 | 465 | 0 |
GW865424 | 264 | 1 | 264 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
---|