y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G126000.1 |
Family | GT47 |
Protein Properties | Length: 331 Molecular Weight: 38299.4 Isoelectric Point: 5.0106 |
Chromosome | Chromosome/Scaffold: 03 Start: 14693664 End: 14694737 |
Description | root hair specific 8 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT47 | 30 | 278 | 1.1e-38 |
GWYHAHQYSLETIFHSRILRHPCRVYDENEAMLFYNVSDDVKYTSALDLMKWLEYREPWVQNSGIDHVFVIGKFSCTRFLELEQMKNPVKLMIERQPWEV IDIGIPHPTFFHPHSDDDIVAWQQKIIGTTRKRLVSFAGAARPDQPHCIRSILLNQSTSTISDNCQFLGCKSGGCDQPESVTKLSLESEFCLQPPGDSPA RKSVFDKLISGCIPVFFYPFTAYDQYPWQLPEDHGKDSEFIDQEEVRQM |
Full Sequence |
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Protein Sequence Length: 331 Download |
MCGDIMPWTD FFKYFNNEAL GEPIANLGNG WYHAHQYSLE TIFHSRILRH PCRVYDENEA 60 MLFYNVSDDV KYTSALDLMK WLEYREPWVQ NSGIDHVFVI GKFSCTRFLE LEQMKNPVKL 120 MIERQPWEVI DIGIPHPTFF HPHSDDDIVA WQQKIIGTTR KRLVSFAGAA RPDQPHCIRS 180 ILLNQSTSTI SDNCQFLGCK SGGCDQPESV TKLSLESEFC LQPPGDSPAR KSVFDKLISG 240 CIPVFFYPFT AYDQYPWQLP EDHGKDSEFI DQEEVRQMKV NAVERLSSIS AREREDMRRY 300 VVYEVLPELV YGDSSSRFED AISITMNTCS R 360 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam03016 | Exostosin | 1.0e-43 | 25 | 289 | 294 | + Exostosin family. The EXT family is a family of tumour suppressor genes. Mutations of EXT1 on 8q24.1, EXT2 on 11p11-13, and EXT3 on 19p have been associated with the autosomal dominant disorder known as hereditary multiple exostoses (HME). This is the most common known skeletal dysplasia. The chromosomal locations of other EXT genes suggest association with other forms of neoplasia. EXT1 and EXT2 have both been shown to encode a heparan sulphate polymerase with both D-glucuronyl (GlcA) and N-acetyl-D-glucosaminoglycan (GlcNAC) transferase activities. The nature of the defect in heparan sulphate biosynthesis in HME is unclear. |
Gene Ontology | |
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GO Term | Description |
GO:0016020 | membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI34680.1 | 0 | 2 | 328 | 629 | 984 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_176534.2 | 0 | 2 | 328 | 301 | 655 | catalytic [Arabidopsis thaliana] |
RefSeq | XP_002269913.1 | 0 | 2 | 328 | 174 | 529 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299537.1 | 0 | 2 | 328 | 209 | 564 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509789.1 | 0 | 2 | 328 | 204 | 558 | Xyloglucan galactosyltransferase KATAMARI1, putative [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
FC346433 | 234 | 65 | 286 | 0 |
FC451292 | 222 | 65 | 274 | 0 |
EL456596 | 263 | 29 | 262 | 0 |
FN000321 | 138 | 194 | 328 | 0 |
BU002508 | 241 | 73 | 298 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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