Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G131700.1 |
Family | GH28 |
Protein Properties | Length: 508 Molecular Weight: 55332.7 Isoelectric Point: 4.8082 |
Chromosome | Chromosome/Scaffold: 03 Start: 15125743 End: 15129434 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 111 | 460 | 0 |
SSEGGSLLYVPPGRWLTGSFNLTSYFTLYLDKDAVLLGSQDESEYPLIEPLPSYGRGRDADGARFSSLIFGNNLTDVVITGANGTIDGQGELWWTKFRAG ELNHTRPYLIEIMFSTNIQISNLTLINSPSWNVHPVYCSNVVVQGLTILAPVRSPNTDGINPDSCTNTKIQDCYIVSGDDCVAVKSGWDEYGIAFGMPTK QVVIRRLTCISPTSAVIALGSEMSGGIEDVRAEDITAIDSESGVRIKTAVGRGGYVKDIYVRGMTLKTMKWVFWMTGNYGSHPDNNYDPNAIPVIQNINY RDVVAENVTMAARLEGIAGDPFTGICISNVTIGLARNRKKLQWNCSDVAG |
Full Sequence |
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Protein Sequence Length: 508 Download |
MSHIEYIYCT DSPSVSAIIN RRTWFSAPME LWTSARRSKV IGVRVVLVYL VLLCTIGVES 60 RKSSKWDCFE YAAVSCRVHS ASVSDFGGVG DGTTVNTEAF QAAIDHLSQF SSEGGSLLYV 120 PPGRWLTGSF NLTSYFTLYL DKDAVLLGSQ DESEYPLIEP LPSYGRGRDA DGARFSSLIF 180 GNNLTDVVIT GANGTIDGQG ELWWTKFRAG ELNHTRPYLI EIMFSTNIQI SNLTLINSPS 240 WNVHPVYCSN VVVQGLTILA PVRSPNTDGI NPDSCTNTKI QDCYIVSGDD CVAVKSGWDE 300 YGIAFGMPTK QVVIRRLTCI SPTSAVIALG SEMSGGIEDV RAEDITAIDS ESGVRIKTAV 360 GRGGYVKDIY VRGMTLKTMK WVFWMTGNYG SHPDNNYDPN AIPVIQNINY RDVVAENVTM 420 AARLEGIAGD PFTGICISNV TIGLARNRKK LQWNCSDVAG ITSEVTPKPC DLLSDQGPGK 480 IGACNYPEDN LPIENMEVQT CSSMLVT* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 4.0e-19 | 83 | 470 | 413 | + Probable polygalacturonase | ||
PLN02218 | PLN02218 | 2.0e-23 | 80 | 442 | 376 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 1.0e-25 | 83 | 380 | 309 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-30 | 179 | 442 | 271 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 3.0e-60 | 81 | 377 | 321 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002278930.1 | 0 | 29 | 502 | 1 | 474 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002299511.1 | 0 | 29 | 502 | 1 | 474 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303605.1 | 0 | 29 | 507 | 1 | 470 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002337059.1 | 0 | 154 | 507 | 3 | 356 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509850.1 | 0 | 29 | 503 | 1 | 475 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 2.00386e-43 | 79 | 446 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 2.00386e-43 | 79 | 446 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 2.00386e-43 | 79 | 446 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 2.00386e-43 | 79 | 446 | 26 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 2uvf_B | 1e-16 | 72 | 420 | 148 | 529 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |