Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G139100.1 |
Family | GH28 |
Protein Properties | Length: 448 Molecular Weight: 48719.5 Isoelectric Point: 8.0607 |
Chromosome | Chromosome/Scaffold: 03 Start: 15680539 End: 15685888 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 75 | 422 | 0 |
RGGTLLYIPPGVYLTESFNLTSHMTLYLARGAVIKATQDTGNWPLIAPLPSYGRGRERLGGRYMSFIHGDGLQDVIITGENGTIDGQGDVWWNMWRQRTL LFTRPNLVEFVNSRGIIISNVIFRNSPFWNIHPVYSRNVVIRYVTILAPLDSPNTDGIDPDSSSNVCIEDSYISTGDDLVAVKSGWDEYGIAYGRPSSDI TIRRITGSSPFSGIAVGSETSGGVKNVLVENVNLYNMGVGIHIKTNIGRGGFIKNITVTDVYMENVRKGIKIAGDVGDHPDDSFNPNALPVVYGITLKSI WGEKVQQPGSIQGLKNSPFTGICLSNINLHGVPGPRSSPWKCSDVSGS |
Full Sequence |
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Protein Sequence Length: 448 Download |
MPSFLVSFLL VFTISVSFLS CITVGEVVTC SGIVPMRLRN DKISIADFGG VGDGKTLNTK 60 AFREAVYRIQ HLRRRGGTLL YIPPGVYLTE SFNLTSHMTL YLARGAVIKA TQDTGNWPLI 120 APLPSYGRGR ERLGGRYMSF IHGDGLQDVI ITGENGTIDG QGDVWWNMWR QRTLLFTRPN 180 LVEFVNSRGI IISNVIFRNS PFWNIHPVYS RNVVIRYVTI LAPLDSPNTD GIDPDSSSNV 240 CIEDSYISTG DDLVAVKSGW DEYGIAYGRP SSDITIRRIT GSSPFSGIAV GSETSGGVKN 300 VLVENVNLYN MGVGIHIKTN IGRGGFIKNI TVTDVYMENV RKGIKIAGDV GDHPDDSFNP 360 NALPVVYGIT LKSIWGEKVQ QPGSIQGLKN SPFTGICLSN INLHGVPGPR SSPWKCSDVS 420 GSALLVSPWP CSELTSPHQT GSCSDHF* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02793 | PLN02793 | 9.0e-24 | 6 | 431 | 448 | + Probable polygalacturonase | ||
PLN02188 | PLN02188 | 4.0e-24 | 5 | 419 | 438 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN02218 | PLN02218 | 1.0e-29 | 43 | 405 | 375 | + polygalacturonase ADPG | ||
pfam00295 | Glyco_hydro_28 | 6.0e-35 | 140 | 423 | 290 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 2.0e-57 | 24 | 409 | 420 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACC91250.1 | 0 | 12 | 447 | 4 | 444 | glycoside hydrolase family 28 protein [Arabidopsis halleri] |
EMBL | CBI34471.1 | 0 | 1 | 444 | 1 | 444 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_194113.1 | 0 | 11 | 447 | 8 | 444 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002304552.1 | 0 | 36 | 447 | 1 | 412 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509949.1 | 0 | 27 | 446 | 26 | 445 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 3.00004e-41 | 42 | 405 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 3.00004e-41 | 42 | 405 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 3.00004e-41 | 42 | 405 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 3.00004e-41 | 42 | 405 | 27 | 412 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 4e-18 | 86 | 346 | 51 | 310 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |