| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.003G143500.1 |
| Family | GH14 |
| Protein Properties | Length: 587 Molecular Weight: 65972.4 Isoelectric Point: 8.4554 |
| Chromosome | Chromosome/Scaffold: 03 Start: 15988469 End: 15993711 |
| Description | beta-amylase 1 |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| GH14 | 93 | 514 | 0 |
| YVMLPADSVAKDGKVRRIKVLTASLRALVTAGVEGVVMEVWWGVVEREKPMVYNWGGYSDLVALARRCGLKVRAVLAFHQHGIGPGDPLWISLPQWVLEE MDKDPDIAYSDRFGRRNMEYISLGCDMFPVLKGRSPLQAYSDFMMNFRDTFRPLLGSVITGVQVGMGPAGELRYPSCPSQELAWAWRSRELGEFQCYDKY MLACLNACAHDVGMREWGYGGPIVAGNLMHGPDNTDFFKSNGGSWNTPYGEFFLQWYSGMLLLHGERICREAKTIFQGTEVDTSAKLAGIHWHYGTQSHP SELTAGYYNTSRRDGYLPIARMFGRYGFGLCCSVFGMRDVEEKQTNPVSSPEDFLKQLLLAARVCQIPVEGENSATFLEEESYEQVLKMSKFFSYGPGNP SFSFNFMRMDRYLFEQHNWARF | |||
| Full Sequence |
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| Protein Sequence Length: 587 Download |
| MAIASPSTTI FSASFCCKRA ESPHPTLFPS ILSTQRAHRL PTRRFAINSR LNSSKFCGFL 60 SPDNGGSEDL EQYELQHGFT GPMERRKKGS PVYVMLPADS VAKDGKVRRI KVLTASLRAL 120 VTAGVEGVVM EVWWGVVERE KPMVYNWGGY SDLVALARRC GLKVRAVLAF HQHGIGPGDP 180 LWISLPQWVL EEMDKDPDIA YSDRFGRRNM EYISLGCDMF PVLKGRSPLQ AYSDFMMNFR 240 DTFRPLLGSV ITGVQVGMGP AGELRYPSCP SQELAWAWRS RELGEFQCYD KYMLACLNAC 300 AHDVGMREWG YGGPIVAGNL MHGPDNTDFF KSNGGSWNTP YGEFFLQWYS GMLLLHGERI 360 CREAKTIFQG TEVDTSAKLA GIHWHYGTQS HPSELTAGYY NTSRRDGYLP IARMFGRYGF 420 GLCCSVFGMR DVEEKQTNPV SSPEDFLKQL LLAARVCQIP VEGENSATFL EEESYEQVLK 480 MSKFFSYGPG NPSFSFNFMR MDRYLFEQHN WARFTRFVRQ MSGANIFRAR LDFGGDGHPT 540 SMSDAVKAKS CIYILLRKKD QTHIQTSKAN LTLRPPSLGL CSYSST* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| PLN02905 | PLN02905 | 2.0e-94 | 91 | 523 | 436 | + beta-amylase | ||
| PLN02161 | PLN02161 | 5.0e-99 | 86 | 522 | 448 | + beta-amylase | ||
| PLN02801 | PLN02801 | 4.0e-111 | 91 | 539 | 458 | + beta-amylase | ||
| PLN02803 | PLN02803 | 2.0e-166 | 18 | 535 | 520 | + beta-amylase | ||
| PLN00197 | PLN00197 | 7.0e-172 | 50 | 530 | 484 | + beta-amylase; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0000272 | polysaccharide catabolic process |
| GO:0016161 | beta-amylase activity |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CAN65860.1 | 0 | 1 | 534 | 1 | 529 | hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002263816.1 | 0 | 29 | 534 | 119 | 618 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002297961.1 | 0 | 1 | 550 | 1 | 550 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002304568.1 | 0 | 86 | 522 | 1 | 437 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002454872.1 | 0 | 113 | 531 | 1 | 417 | hypothetical protein SORBIDRAFT_03g000480 [Sorghum bicolor] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1b1y_A | 0 | 92 | 528 | 8 | 441 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 2xgi_A | 0 | 83 | 528 | 1 | 445 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 2xgb_A | 0 | 83 | 528 | 1 | 445 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 2xg9_A | 0 | 83 | 528 | 1 | 445 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| PDB | 2xfy_A | 0 | 83 | 528 | 1 | 445 | A Chain A, Sevenfold Mutant Of Barley Beta-Amylase |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| starch degradation I | RXN-1827 | EC-3.2.1.2 | β-amylase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
|---|---|---|---|---|
| Hit | Length | Start | End | EValue |
| JK654693 | 255 | 161 | 415 | 0 |
| DN503234 | 227 | 345 | 571 | 0 |
| HO784754 | 294 | 43 | 332 | 0 |
| HO784754 | 99 | 329 | 427 | 0 |
| HO784754 | 65 | 426 | 488 | 0 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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