y
Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G148000.2 |
Family | CBM57 |
Protein Properties | Length: 808 Molecular Weight: 88309.1 Isoelectric Point: 4.975 |
Chromosome | Chromosome/Scaffold: 03 Start: 16311879 End: 16318582 |
Description | Leucine-rich repeat transmembrane protein kinase |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM57 | 425 | 587 | 3e-29 |
SIKCGGPEMRTADGTVYEAENSSLSAASFSVTSTEKWAVSNVGLFADRRSPDYVENTLTQVLSTNIPELYQTSRISPGSLRYFGLGLENGPYTVHLLFAE TAFADRSSQTWESLGRRVFDIYIQGSRQLKDFDISKEAGGVERSITRIFNVTVSENHLEIHLF |
Full Sequence |
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Protein Sequence Length: 808 Download |
MELSVKLLYS SALAYYFCLL PFIVLLSTFH LSSAQNATTD PSEVSALNSL FEQWDTQAVG 60 LWNLSGEPCS GSAIDQTDFE DPDNNPAIKC ECTQTTCHIT QLRVYALNKR GVIPEVLAAL 120 KYLTFLKIDQ NYFTGPLPAF IGNLSALKGL SIAHNAFSGT IPKELGNLKE LTLLSFGVNN 180 FSGTLPPELG NLVNLEELYI NSCGLGGEIP STFANLQRLR VLWASDDSFT GNIPDFIGNW 240 TGLTSLRFQG NSFEGPIPLS FSNLTSLNSL RISDLSNMSS TLDFIKNLKN LTDLNLRNAL 300 INGSIPSDIG ELQTLNRLDL SFNNLTGQVP SALFRMSSLE YLFLGNNSLS GTLPEQKSDT 360 LQTIDLSYNY LSGTFPSWVA SNVQLNLVAN NFTFDNSNIS VLPGLNCLQR NFPCNRDNPR 420 YANFSIKCGG PEMRTADGTV YEAENSSLSA ASFSVTSTEK WAVSNVGLFA DRRSPDYVEN 480 TLTQVLSTNI PELYQTSRIS PGSLRYFGLG LENGPYTVHL LFAETAFADR SSQTWESLGR 540 RVFDIYIQGS RQLKDFDISK EAGGVERSIT RIFNVTVSEN HLEIHLFWAG KGTCCTPVQG 600 YYGPIISALN VVPGFTPTVS GIPPSTRKEK SRTGMVVGIS VSAGVVCLTL IFAVVYIMRK 660 KDSEDEEVFP GMGPGPNTFS YAQLRGATDD FSPSNMLGEG GFGAVYKGLL SDGRAVAVKQ 720 LSVASNQGMS QFITEIATIS AVQHCNLVKL YGCCIEGNRR LLVYEYLENK SLDKNLFGMK 780 MPKIVCLLPL SNHGNLILYT HPDDQNI* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN00113 | PLN00113 | 4.0e-31 | 111 | 377 | 296 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 1.0e-32 | 111 | 376 | 280 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 1.0e-33 | 111 | 376 | 268 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
PLN00113 | PLN00113 | 3.0e-35 | 108 | 393 | 295 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
pfam11721 | Malectin | 3.0e-53 | 423 | 609 | 192 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. |
Gene Ontology | |
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GO Term | Description |
GO:0004672 | protein kinase activity |
GO:0005515 | protein binding |
GO:0005524 | ATP binding |
GO:0006468 | protein phosphorylation |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI39026.1 | 0 | 32 | 778 | 36 | 786 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002272404.1 | 0 | 46 | 778 | 5 | 743 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002273016.1 | 0 | 32 | 778 | 36 | 788 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002297945.1 | 0 | 1 | 781 | 1 | 788 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002303698.1 | 0 | 40 | 778 | 15 | 753 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3rj0_A | 8e-26 | 95 | 377 | 241 | 529 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3rj0_A | 9e-25 | 111 | 376 | 405 | 718 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3rj0_A | 1e-21 | 99 | 389 | 222 | 493 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3rj0_A | 3e-21 | 99 | 355 | 441 | 719 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |
PDB | 3rj0_A | 1e-20 | 108 | 337 | 326 | 559 | B Chain B, The Avrptob-Bak1 Complex Reveals Two Structurally Similar Kinaseinteracting Domains In A Single Type Iii Effector |