Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.003G175900.1 |
Family | PL1 |
Protein Properties | Length: 453 Molecular Weight: 49551.8 Isoelectric Point: 7.9428 |
Chromosome | Chromosome/Scaffold: 03 Start: 18423236 End: 18428254 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 164 | 372 | 0 |
AVIQDAPLWIVFKRDMVIQLKQELIMNSFKTIDGRGVNVHIANGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRSSPSHYGWRTMADGDAISIFGSSHIW VDHNSLSNCADGLVDAVMGSTAITVSNNHFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTIN SQGNRYNAP |
Full Sequence |
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Protein Sequence Length: 453 Download |
MTMAVPQKWV CVFSAVIVLL FVGVVATSRP DVVGISALTR NVEAEKEQSS SNSTMAARSQ 60 EEADAFNEKA VAADPEEVVS MVEMNIRNST ERRRLGYFSC GTGNPIDDCW RCDPNWHKNR 120 KRLADCGIGF GRNAIGGRDG RFYVVTDSSD HDPVNPRPGT LRHAVIQDAP LWIVFKRDMV 180 IQLKQELIMN SFKTIDGRGV NVHIANGGCI TIQFVTNVII HGLHIHDCKP TGNAMVRSSP 240 SHYGWRTMAD GDAISIFGSS HIWVDHNSLS NCADGLVDAV MGSTAITVSN NHFTHHNEVM 300 LLGHSDSYTR DKQMQVTIAY NHFGEGLIQR MPRCRHGYFH VVNNDYTHWE MYAIGGSAEP 360 TINSQGNRYN APANPFAKEV TKRVDTAPGK WKSWNWRSEG DLLANGAYFT PSGAGASASY 420 ARASSLGAKS SSMVGAMTAN SGVLGCRRGH QC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam05048 | NosD | 0.008 | 194 | 323 | 142 | + Periplasmic copper-binding protein (NosD). NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme (NosZ). This region forms a parallel beta helix domain. | ||
COG3866 | PelB | 9.0e-30 | 191 | 409 | 233 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-73 | 184 | 369 | 208 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 5.0e-82 | 178 | 372 | 206 | + Amb_all domain. |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ACB12931.1 | 0 | 1 | 452 | 1 | 452 | pectate lyase 1-27 [Populus tremula x Populus tremuloides] |
GenBank | ADD62392.1 | 0 | 40 | 452 | 34 | 445 | pectase lyase [Prunus persica] |
DDBJ | BAF43573.1 | 0 | 40 | 452 | 14 | 425 | pectate lyase [Prunus persica] |
RefSeq | XP_002297822.1 | 0 | 3 | 452 | 1 | 450 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002304700.1 | 0 | 1 | 452 | 1 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 104 | 444 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 104 | 444 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 2e-18 | 173 | 360 | 50 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.000000000000005 | 194 | 346 | 135 | 301 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1bn8_A | 0.0000000000001 | 194 | 381 | 151 | 358 | A Chain A, Bacillus Subtilis Pectate Lyase |