| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.003G196500.1 |
| Family | GH2 |
| Protein Properties | Length: 1114 Molecular Weight: 125771 Isoelectric Point: 5.4848 |
| Chromosome | Chromosome/Scaffold: 03 Start: 19932688 End: 19942376 |
| Description | glycoside hydrolase family 2 protein |
| View CDS | |
| External Links |
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| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
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| Family | Start | End | Evalue |
| GH2 | 87 | 979 | 0 |
| VKSLSGFWRFFLAPGPDSVPKKFYDAEFEDSEWNTLPVPSNWELHGYDRPIYANVLYPFPVDPPRVPDDNPTGCYRTYFDLPQGWQDRRIFLHFEAVDSA FCAWINGVAVGYSQDSRLPAEFEITDYCYPCGSGKKNLLAVQVFRWSDGSYLEDQDHWWMSGIHRDVLLLSKAQVFIADYFFKSNLAENFTSADIEVEVK IESALEIPRDKIFDNFTIEAALYDTGSWYNSEESPDLLSSNVANLKLTHSPMGILGFLGNFLEGKLEKPKLWSAEQPNLYILVLSLKDATGQVVDCESCL VGIRQISKAPKQLLVNGCPVIIRGVNRHEHHPRVGKTNIESCMIKDLVLMKQNNMNAVRNSHYPQHPRWYELCDLFGLYMIDEANIETHGFHLCEHLKHP TQEQSWAAAMMDRVISMVERDKNHACIISWSLGNESSYGPNHSAAAGWIRERDPSRLVHYEGGGSRTASTDIICPMYMRVWDIVKIAKDPTEPRPLILCE YSHAMGNSSGNIREYWDAIDSTFGLQGGFIWEWVDQALLKESGDGRKHWAYGGDFGDTPNDLNFCLNGLTWPDRTPHPALEEVKHVYQPIKVSLEESTIK ITNTHFFQTTQGLEFSWTVHGDGYEFGSGILSLPLTEPQSSYKLEWQSGPWYPLLASSFAEEIFVTITTRLLHSTRWVEAGHVISSTQIQLPTRQKIMPH VIKTTDAKVFSETLGDTVRVSQLNVWEITWNIQTGSIESWKVGGVPVIKEGIIPCFWRAPTDNDKGGEKDSYYSRWKAAGIDSLVFQTKSCSVKSTTDNL VKIEVIYVGVPSCEERSLSESTNATALITVNMIYTIYSSGDLIIECNAIPSSELPPLPRVGVELHLEKSVDQIKWYGRGPFECYPDRKAAAHV | |||
| Full Sequence |
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| Protein Sequence Length: 1114 Download |
| MASLVAQLVS PVETGHKVWQ DQAFIKWRKR DPHVTLHCHE SVEGSLRYWY QRNKVDHLVS 60 KSAVWNDDAV QGALDSAAFW VKDLPFVKSL SGFWRFFLAP GPDSVPKKFY DAEFEDSEWN 120 TLPVPSNWEL HGYDRPIYAN VLYPFPVDPP RVPDDNPTGC YRTYFDLPQG WQDRRIFLHF 180 EAVDSAFCAW INGVAVGYSQ DSRLPAEFEI TDYCYPCGSG KKNLLAVQVF RWSDGSYLED 240 QDHWWMSGIH RDVLLLSKAQ VFIADYFFKS NLAENFTSAD IEVEVKIESA LEIPRDKIFD 300 NFTIEAALYD TGSWYNSEES PDLLSSNVAN LKLTHSPMGI LGFLGNFLEG KLEKPKLWSA 360 EQPNLYILVL SLKDATGQVV DCESCLVGIR QISKAPKQLL VNGCPVIIRG VNRHEHHPRV 420 GKTNIESCMI KDLVLMKQNN MNAVRNSHYP QHPRWYELCD LFGLYMIDEA NIETHGFHLC 480 EHLKHPTQEQ SWAAAMMDRV ISMVERDKNH ACIISWSLGN ESSYGPNHSA AAGWIRERDP 540 SRLVHYEGGG SRTASTDIIC PMYMRVWDIV KIAKDPTEPR PLILCEYSHA MGNSSGNIRE 600 YWDAIDSTFG LQGGFIWEWV DQALLKESGD GRKHWAYGGD FGDTPNDLNF CLNGLTWPDR 660 TPHPALEEVK HVYQPIKVSL EESTIKITNT HFFQTTQGLE FSWTVHGDGY EFGSGILSLP 720 LTEPQSSYKL EWQSGPWYPL LASSFAEEIF VTITTRLLHS TRWVEAGHVI SSTQIQLPTR 780 QKIMPHVIKT TDAKVFSETL GDTVRVSQLN VWEITWNIQT GSIESWKVGG VPVIKEGIIP 840 CFWRAPTDND KGGEKDSYYS RWKAAGIDSL VFQTKSCSVK STTDNLVKIE VIYVGVPSCE 900 ERSLSESTNA TALITVNMIY TIYSSGDLII ECNAIPSSEL PPLPRVGVEL HLEKSVDQIK 960 WYGRGPFECY PDRKAAAHVG VYEQNVGDMH VPYIVPVECS GRADVRWVTF QNKDGVGIFA 1020 STYGSSPPMQ MSASYYSTAE LDRATHHEEL VQGNDIEVHL DHKHMGLGGD DSWSPCVHDK 1080 YLVPAVPCSF SIRLCPITAA TSGLEIYKSQ FQN* |
| Functional Domains Download unfiltered results here | ||||||||
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| smart01038 | Bgal_small_N | 2.0e-97 | 812 | 1094 | 284 | + Beta galactosidase small chain. This domain comprises the small chain of dimeric beta-galactosidases EC:3.2.1.23. This domain is also found in single chain beta-galactosidase. | ||
| pfam02836 | Glyco_hydro_2_C | 1.0e-109 | 396 | 677 | 295 | + Glycosyl hydrolases family 2, TIM barrel domain. This family contains beta-galactosidase, beta-mannosidase and beta-glucuronidase activities. | ||
| COG3250 | LacZ | 4.0e-153 | 87 | 977 | 897 | + Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism] | ||
| PRK09525 | lacZ | 0 | 85 | 1096 | 1042 | + beta-D-galactosidase; Reviewed | ||
| PRK10340 | ebgA | 0 | 88 | 1100 | 1018 | + cryptic beta-D-galactosidase subunit alpha; Reviewed | ||
| Gene Ontology | |
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| GO Term | Description |
| GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
| GO:0004565 | beta-galactosidase activity |
| GO:0005975 | carbohydrate metabolic process |
| GO:0009341 | beta-galactosidase complex |
| Annotations - NR Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002266400.1 | 0 | 1 | 1113 | 1 | 1114 | PREDICTED: hypothetical protein isoform 1 [Vitis vinifera] |
| RefSeq | XP_002266434.1 | 0 | 1 | 1113 | 1 | 1115 | PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] |
| RefSeq | XP_002299206.1 | 0 | 1 | 1113 | 1 | 1110 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002303929.1 | 0 | 1 | 1113 | 1 | 1113 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002513059.1 | 0 | 1 | 1113 | 1 | 1110 | beta-galactosidase, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
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| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1f4h_D | 0 | 87 | 1095 | 49 | 1019 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 1f4h_C | 0 | 87 | 1095 | 49 | 1019 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 1f4h_B | 0 | 87 | 1095 | 49 | 1019 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 1f4h_A | 0 | 87 | 1095 | 49 | 1019 | A Chain A, The Structure Of Endoglucanase From Termite, Nasutitermes Takasagoensis, At Ph 2.5. |
| PDB | 1f4a_D | 0 | 87 | 1095 | 49 | 1019 | A Chain A, E. Coli (Lacz) Beta-Galactosidase (Ncs Constrained Monomer- Orthorhombic) |
| Metabolic Pathways | |||
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| Pathway Name | Reaction | EC | Protein Name |
| lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |
| Hydropathy |
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| EST Download unfiltered results here | ||||
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| Hit | Length | Start | End | EValue |
| ES794486 | 302 | 451 | 752 | 0 |
| HO804274 | 390 | 129 | 510 | 0 |
| EL444301 | 297 | 438 | 734 | 0 |
| HO804274 | 50 | 501 | 549 | 0.0000001 |
| ES794486 | 50 | 753 | 802 | 0.0000004 |
| Sequence Alignments (This image is cropped. Click for full image.) |
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| Phylogeny |
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