Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G033700.1 |
Family | CE8 |
Protein Properties | Length: 325 Molecular Weight: 36092.8 Isoelectric Point: 8.7098 |
Chromosome | Chromosome/Scaffold: 04 Start: 2470639 End: 2475043 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 39 | 314 | 0 |
IVVDPSGKGNFKTIQGAIDSIPENNNNWIKVQVNAGIYIEQVNIPIEKPCIFLEGNGRRQTTVTYNAHQDTADSATFTSLPSNIVVKGITFENSFNRRLI QNTYNGIKSPGVLPALSARIYGDKSAFYDCAFLGVQDTLWDVNGRHHFSNCYIEGSVDFIYGAGQSFYEGCIINVTGGGFITAQGKEFHNDTNGFVFSRC YVTGVKGAKAYLGRAYRGYSTVIYYNTYLSDVVQPEGWFAWDYVGHETPNTLNRVKWEKKLTIQQLSRFSKSSFID |
Full Sequence |
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Protein Sequence Length: 325 Download |
MQRSPFVFVI TLFMTIFVGV SQAVNCIRGT GGSKVARTIV VDPSGKGNFK TIQGAIDSIP 60 ENNNNWIKVQ VNAGIYIEQV NIPIEKPCIF LEGNGRRQTT VTYNAHQDTA DSATFTSLPS 120 NIVVKGITFE NSFNRRLIQN TYNGIKSPGV LPALSARIYG DKSAFYDCAF LGVQDTLWDV 180 NGRHHFSNCY IEGSVDFIYG AGQSFYEGCI INVTGGGFIT AQGKEFHNDT NGFVFSRCYV 240 TGVKGAKAYL GRAYRGYSTV IYYNTYLSDV VQPEGWFAWD YVGHETPNTL NRVKWEKKLT 300 IQQLSRFSKS SFIDQDGWLT KLPL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02682 | PLN02682 | 3.0e-68 | 34 | 320 | 320 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 2.0e-68 | 29 | 319 | 306 | + putative pectinesterase | ||
PLN02480 | PLN02480 | 2.0e-74 | 37 | 319 | 304 | + Probable pectinesterase | ||
PLN02176 | PLN02176 | 9.0e-92 | 33 | 324 | 313 | + putative pectinesterase | ||
PLN02497 | PLN02497 | 2.0e-117 | 36 | 324 | 309 | + probable pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002318946.1 | 0 | 1 | 324 | 1 | 339 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330032.1 | 0 | 1 | 324 | 1 | 324 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002515259.1 | 0 | 23 | 323 | 24 | 339 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002515259.1 | 0 | 34 | 323 | 359 | 660 | pectinesterase, putative [Ricinus communis] |
RefSeq | XP_002529267.1 | 0 | 35 | 323 | 36 | 337 | Pectinesterase-2 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 2e-36 | 33 | 319 | 3 | 308 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 3e-23 | 40 | 319 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 1qjv_B | 0.000000000008 | 49 | 211 | 18 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 1qjv_A | 0.000000000008 | 49 | 211 | 18 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
PDB | 2ntq_B | 0.000000000008 | 49 | 211 | 18 | 190 | A Chain A, Pectin Methylesterase Pema From Erwinia Chrysanthemi |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |