| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.004G047300.4 |
| Family | CBM57 |
| Protein Properties | Length: 597 Molecular Weight: 65310.8 Isoelectric Point: 7.4499 |
| Chromosome | Chromosome/Scaffold: 04 Start: 3617791 End: 3623432 |
| Description | receptor like protein 4 |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
 | |||
| Family | Start | End | Evalue |
| CBM57 | 183 | 332 | 2.9e-26 |
| DYSGDHWGGDRFWSPIKTFGQGSDLARSTESGIKKASNAPNYYPEALYQTALVSTDTQPDLAYTMDVDPNRNYSIWLHFAEIDSSVTAAGKRVFDILING VVAFEDVDIVKMSGDRYTALVLNTTVTVSGRILTIGLHPKEGSHAIINAI | |||
| Full Sequence |
|---|
| Protein Sequence Length: 597 Download |
| MRISCGARLN VHTAPTNTLW YKDFAYTGGI PANATRPSYI SPPLKTLRYF PLSSGPNNCY 60 NINRVPKGHY TVRVFFGLDG HRNFDNEPLF DISIEGTQIY SLKSGWTNHD DQVFTEALVF 120 LTDGTASICF HSTGHGDPAI LSIEILQMED RAYYFGPAWV QGIILRTAAR LSCGNGKPKF 180 DVDYSGDHWG GDRFWSPIKT FGQGSDLARS TESGIKKASN APNYYPEALY QTALVSTDTQ 240 PDLAYTMDVD PNRNYSIWLH FAEIDSSVTA AGKRVFDILI NGVVAFEDVD IVKMSGDRYT 300 ALVLNTTVTV SGRILTIGLH PKEGSHAIIN AIEVFEILTA ESKTSLEEVR ALQSLKSALS 360 LPLRFGWNGD PCVPQEHPWN GADCHFDKTS SKWFIDGLSL DNQGLRGFLP NDISRLHHLQ 420 NINLSDNSIR GAVPPSIGTI PGLVVLDLSY NSFNGSIPES LGQLTSLRRL NLNGNSLSGR 480 VPAALGGRLL HGASFNFTDN AGLCGIPGLR TCGPHLSAGE KIGIAFGTSV GFLLMVICSM 540 CWWKRRQNIL RAQQIAERGA PYAKARTQLS HDIQMTRHYS HGNARTAAEN GPSLLS* 600 |
| Functional Domains Download unfiltered results here | ||||||||
|---|---|---|---|---|---|---|---|---|
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| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
| pfam11721 | Malectin | 8.0e-5 | 1 | 143 | 163 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| PLN00113 | PLN00113 | 6.0e-8 | 347 | 458 | 117 | + leucine-rich repeat receptor-like protein kinase; Provisional | ||
| pfam11721 | Malectin | 3.0e-18 | 170 | 332 | 175 | + Di-glucose binding within endoplasmic reticulum. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. It carries a signal peptide from residues 1-26, a C-terminal transmembrane helix from residues 255-274, and a highly conserved central part of approximately 190 residues followed by an acidic, glutamate-rich region. Carbohydrate-binding is mediated by the four aromatic residues, Y67, Y89, Y116, and F117 and the aspartate at D186. NMR-based ligand-screening studies has shown binding of the protein to maltose and related oligosaccharides, on the basis of which the protein has been designated "malectin", and its endogenous ligand is found to be Glc2-high-mannose N-glycan. | ||
| pfam12819 | Malectin_like | 4.0e-73 | 3 | 337 | 352 | + Carbohydrate-binding protein of the ER. Malectin is a membrane-anchored protein of the endoplasmic reticulum that recognises and binds Glc2-N-glycan. The domain is found on a number of plant receptor kinases. | ||
| PLN03150 | PLN03150 | 0 | 1 | 596 | 598 | + hypothetical protein; Provisional | ||
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005515 | protein binding |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| EMBL | CBI30598.1 | 0 | 1 | 596 | 27 | 624 | unnamed protein product [Vitis vinifera] |
| RefSeq | NP_174156.1 | 0 | 1 | 596 | 29 | 626 | AtRLP4 (Receptor Like Protein 4); protein binding [Arabidopsis thaliana] |
| RefSeq | XP_002279791.1 | 0 | 1 | 596 | 1 | 600 | PREDICTED: hypothetical protein [Vitis vinifera] |
| RefSeq | XP_002305781.1 | 0 | 1 | 596 | 1 | 596 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002509445.1 | 0 | 1 | 596 | 30 | 629 | serine-threonine protein kinase, plant-type, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 3rgz_A | 0.00000000000001 | 386 | 519 | 628 | 755 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3rgz_A | 0.0000000004 | 395 | 485 | 468 | 558 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3rgz_A | 0.0000004 | 417 | 512 | 394 | 489 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3rgz_A | 0.000002 | 398 | 485 | 399 | 486 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3rgz_A | 0.00002 | 405 | 486 | 454 | 535 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
