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Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G048600.1 |
Family | GT35 |
Protein Properties | Length: 1015 Molecular Weight: 114246 Isoelectric Point: 6.3343 |
Chromosome | Chromosome/Scaffold: 04 Start: 3747214 End: 3761300 |
Description | alpha-glucan phosphorylase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT35 | 296 | 1008 | 0 |
ALKELGFEFEVLAEQEGDAALGNGGLARLSACQMDSLATMDYPAWGYGLRYQYGLFRQVILDGYQHEQPDYWLNFGNPWEIERVHVTYPVKFYGTVEDEN FNGGKRKVWLPGETVEAVAYDNPIPGHGTRNTITLRLWAAKPSDQIDMESYNTGDYINAVVNRQRAETISSVLFPDDRSYQGKELRLKQQYFFVSASLQD IIRRFKDSHSNFDDFHEKVALQLNDTHPSLAIAEVMRVLVDEEHLDWNRAWDIVCKIFSFTTHTVLPEGLEKVPVDLLESLLPRHLQIIYDINFDYIEEL KKKIGLDYDRLSRMSIVEDGAIKSIRMANLAIVCSHTVNGVSRVHSELLKTRVFKDFYELWPHKFDYKTNGVTQRRWIVVSNPSLSALISKWLGTEAWIR DVDLLAGLQEQAANADLHEEWRMVRKVNKMRLAEYIEAMSGVKVSVSAMFDVQIKRIHEYKRQLLNILGIVHRYDCIKNMEKSDRTKVVPRVCIIGGKAA PGYEIARKIIKLCNAVAEKINNDPDVGDLLKLVFIPDYNVSVAELVIPGADLSQHISTAGHEASGTGSMKFLMNGCLLLATEDGSTVEIIEEIGKDNMFL FGAKMHEVPALREKGPALKVPLQFARVVRMVRDGYFGFQDYFESLCDKVEGGNDFYLLGYDFQSYLEAQAAADKAFVDQEKWTRMSILSTAGSGRFSSDR TIEEYAEKTWGIE |
Full Sequence |
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Protein Sequence Length: 1015 Download |
MSAISVPLYQ SKLTFPSTTA AASPSSAFFV STNKLSFSTA LLHVTSHITS RTLASTNQSL 60 STTTTATIEI NNNDPSDPHT TAIVIRARNR IGLLQVITRV FKILGLRIEK ATVEFDEGGG 120 GGGGECFIKT FYVSDSHGNR IEDDQSLEKI KKALFDAIDG GAGEVKVGSS SSTGKGVVVR 180 RSGGLRGGET RVGVENMFGL MDRFLKSDPS SLQKDILDHV EYTVARSRFS FDDFEAYQAL 240 AHSVRDRLIE RWHDTQLHFK KKDPKRIYFL SMEFLMGRSL SNSAINLGIR DQYADALKEL 300 GFEFEVLAEQ EGDAALGNGG LARLSACQMD SLATMDYPAW GYGLRYQYGL FRQVILDGYQ 360 HEQPDYWLNF GNPWEIERVH VTYPVKFYGT VEDENFNGGK RKVWLPGETV EAVAYDNPIP 420 GHGTRNTITL RLWAAKPSDQ IDMESYNTGD YINAVVNRQR AETISSVLFP DDRSYQGKEL 480 RLKQQYFFVS ASLQDIIRRF KDSHSNFDDF HEKVALQLND THPSLAIAEV MRVLVDEEHL 540 DWNRAWDIVC KIFSFTTHTV LPEGLEKVPV DLLESLLPRH LQIIYDINFD YIEELKKKIG 600 LDYDRLSRMS IVEDGAIKSI RMANLAIVCS HTVNGVSRVH SELLKTRVFK DFYELWPHKF 660 DYKTNGVTQR RWIVVSNPSL SALISKWLGT EAWIRDVDLL AGLQEQAANA DLHEEWRMVR 720 KVNKMRLAEY IEAMSGVKVS VSAMFDVQIK RIHEYKRQLL NILGIVHRYD CIKNMEKSDR 780 TKVVPRVCII GGKAAPGYEI ARKIIKLCNA VAEKINNDPD VGDLLKLVFI PDYNVSVAEL 840 VIPGADLSQH ISTAGHEASG TGSMKFLMNG CLLLATEDGS TVEIIEEIGK DNMFLFGAKM 900 HEVPALREKG PALKVPLQFA RVVRMVRDGY FGFQDYFESL CDKVEGGNDF YLLGYDFQSY 960 LEAQAAADKA FVDQEKWTRM SILSTAGSGR FSSDRTIEEY AEKTWGIEPC RCPF* 1020 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd04300 | GT1_Glycogen_Phosphorylase | 0 | 213 | 1007 | 807 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
TIGR02093 | P_ylase | 0 | 216 | 1007 | 804 | + glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
pfam00343 | Phosphorylase | 0 | 296 | 1009 | 724 | + Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. | ||
PRK14986 | PRK14986 | 0 | 243 | 1011 | 778 | + glycogen phosphorylase; Provisional | ||
COG0058 | GlgP | 0 | 204 | 1009 | 819 | + Glucan phosphorylase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004645 | phosphorylase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI30609.1 | 0 | 201 | 1013 | 1 | 813 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001757919.1 | 0 | 201 | 1010 | 1 | 810 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002273615.1 | 0 | 197 | 1013 | 1 | 817 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305114.1 | 0 | 197 | 1014 | 1 | 818 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509431.1 | 0 | 1 | 1014 | 1 | 949 | glycogen phosphorylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ygp_B | 0 | 178 | 1010 | 3 | 878 | A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With Phosphate Bound In The Active Site. |
PDB | 1ygp_A | 0 | 178 | 1010 | 3 | 878 | A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With Phosphate Bound In The Active Site. |
PDB | 4el5_A | 0 | 210 | 1011 | 14 | 820 | A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With Phosphate Bound In The Active Site. |
PDB | 4el0_A | 0 | 210 | 1011 | 14 | 820 | A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With Phosphate Bound In The Active Site. |
PDB | 4eky_A | 0 | 210 | 1011 | 14 | 820 | A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With Phosphate Bound In The Active Site. |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1826 | EC-2.4.1.1 | phosphorylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO779924 | 623 | 101 | 721 | 0 |
HO586252 | 541 | 472 | 1010 | 0 |
HO376977 | 448 | 569 | 1015 | 0 |
HO417459 | 298 | 623 | 916 | 0 |
HO779924 | 33 | 68 | 100 | 0.13 |
Sequence Alignments (This image is cropped. Click for full image.) |
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