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Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G048600.2 |
Family | GT35 |
Protein Properties | Length: 707 Molecular Weight: 80909.4 Isoelectric Point: 6.165 |
Chromosome | Chromosome/Scaffold: 04 Start: 3747214 End: 3760650 |
Description | alpha-glucan phosphorylase 2 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GT35 | 100 | 700 | 0 |
ALKELGFEFEVLAEQEGDAALGNGGLARLSACQMDSLATMDYPAWGYGLRYQYGLFRQVILDGYQHEQPDYWLNFGNPWEIERVHVTYPVKFYGTVEDEN FNGGKRKVWLPGETVEAVAYDNPIPGHGTRNTITLRLWAAKPSDQIDMESYNTGDYINAVVNRQRAETISSVLFPDDRSYQGKELRLKQQYFFVSASLQD IIRRFKDSHSNFDDFHEKVALQLNDTHPSLAIAEVMRVLVDEEHLDWNRAWDIVCKIFSFTTHTVLPEGLEKVPVDLLESLLPRHLQIIYDINFDYIEEL KKKIGLDYDRLSRMSIVEDGAIKSIRMANLAIVCSHTVNGVSRVHSELLKTRVFKDFYELWPHKFDYKTNGVTQRRWIVVSNPSLSALISKWLGTEAWIR DVDLLAGLQEQAANADLHEEWRMVRKVNKMRLAEYIEAMSGVKVSVSAMFDVQIKRIHEYKRQLLNILGIVHRYDCIKNMEKSDRTKVVPRVCIIGGKAA PGYEIARKIIKLCNAVAEKINNDPDVGDLLKLVFIPDYNVSVAELVIPGADLSQHISTAGHEASGTGSMKFLMNGCLLLATEDGSTVEIIEEIGKDNMVF F |
Full Sequence |
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Protein Sequence Length: 707 Download |
MFGLMDRFLK SDPSSLQKDI LDHVEYTVAR SRFSFDDFEA YQALAHSVRD RLIERWHDTQ 60 LHFKKKDPKR IYFLSMEFLM GRSLSNSAIN LGIRDQYADA LKELGFEFEV LAEQEGDAAL 120 GNGGLARLSA CQMDSLATMD YPAWGYGLRY QYGLFRQVIL DGYQHEQPDY WLNFGNPWEI 180 ERVHVTYPVK FYGTVEDENF NGGKRKVWLP GETVEAVAYD NPIPGHGTRN TITLRLWAAK 240 PSDQIDMESY NTGDYINAVV NRQRAETISS VLFPDDRSYQ GKELRLKQQY FFVSASLQDI 300 IRRFKDSHSN FDDFHEKVAL QLNDTHPSLA IAEVMRVLVD EEHLDWNRAW DIVCKIFSFT 360 THTVLPEGLE KVPVDLLESL LPRHLQIIYD INFDYIEELK KKIGLDYDRL SRMSIVEDGA 420 IKSIRMANLA IVCSHTVNGV SRVHSELLKT RVFKDFYELW PHKFDYKTNG VTQRRWIVVS 480 NPSLSALISK WLGTEAWIRD VDLLAGLQEQ AANADLHEEW RMVRKVNKMR LAEYIEAMSG 540 VKVSVSAMFD VQIKRIHEYK RQLLNILGIV HRYDCIKNME KSDRTKVVPR VCIIGGKAAP 600 GYEIARKIIK LCNAVAEKIN NDPDVGDLLK LVFIPDYNVS VAELVIPGAD LSQHISTAGH 660 EASGTGSMKF LMNGCLLLAT EDGSTVEIIE EIGKDNMVFF IWCKNA* 720 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
cd04300 | GT1_Glycogen_Phosphorylase | 0 | 17 | 700 | 684 | + This is a family of oligosaccharide phosphorylases. It includes yeast and mammalian glycogen phosphorylases, plant starch/glucan phosphorylase, as well as the maltodextrin phosphorylases of bacteria. The members of this family catalyze the breakdown of oligosaccharides into glucose-1-phosphate units. They are important allosteric enzymes in carbohydrate metabolism. The allosteric control mechanisms of yeast and mammalian members of this family are different from that of bacterial members. The members of this family belong to the GT-B structural superfamily of glycoslytransferases, which have characteristic N- and C-terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homology. The large cleft that separates the two domains includes the catalytic center and permits a high degree of flexibility. | ||
TIGR02093 | P_ylase | 0 | 20 | 700 | 681 | + glycogen/starch/alpha-glucan phosphorylases. This family consists of phosphorylases. Members use phosphate to break alpha 1,4 linkages between pairs of glucose residues at the end of long glucose polymers, releasing alpha-D-glucose 1-phosphate. The nomenclature convention is to preface the name according to the natural substrate, as in glycogen phosphorylase, starch phosphorylase, maltodextrin phosphorylase, etc. Name differences among these substrates reflect differences in patterns of branching with alpha 1,6 linkages. Members include allosterically regulated and unregulated forms. A related family, TIGR02094, contains examples known to act well on particularly small alpha 1,4 glucans, as may be found after import from exogenous sources [Energy metabolism, Biosynthesis and degradation of polysaccharides]. | ||
pfam00343 | Phosphorylase | 0 | 100 | 700 | 601 | + Carbohydrate phosphorylase. The members of this family catalyze the formation of glucose 1-phosphate from one of the following polyglucoses; glycogen, starch, glucan or maltodextrin. | ||
PRK14986 | PRK14986 | 0 | 47 | 700 | 654 | + glycogen phosphorylase; Provisional | ||
COG0058 | GlgP | 0 | 8 | 700 | 695 | + Glucan phosphorylase [Carbohydrate transport and metabolism] |
Gene Ontology | |
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GO Term | Description |
GO:0004645 | phosphorylase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI30609.1 | 0 | 5 | 700 | 1 | 696 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_001757919.1 | 0 | 5 | 700 | 1 | 696 | predicted protein [Physcomitrella patens subsp. patens] |
RefSeq | XP_002273615.1 | 0 | 1 | 700 | 1 | 700 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305114.1 | 0 | 1 | 700 | 1 | 700 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002509431.1 | 0 | 1 | 700 | 184 | 831 | glycogen phosphorylase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1ygp_B | 0 | 16 | 700 | 44 | 759 | A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With Phosphate Bound In The Active Site. |
PDB | 1ygp_A | 0 | 16 | 700 | 44 | 759 | A Chain A, Phosphorylated Form Of Yeast Glycogen Phosphorylase With Phosphate Bound In The Active Site. |
PDB | 2gj4_A | 0 | 14 | 700 | 14 | 700 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
PDB | 4el5_A | 0 | 14 | 700 | 14 | 700 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
PDB | 4el0_A | 0 | 14 | 700 | 14 | 700 | A Chain A, Structure Of Rabbit Muscle Glycogen Phosphorylase In Complex With Ligand |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
starch degradation I | RXN-1826 | EC-2.4.1.1 | phosphorylase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
HO779924 | 525 | 1 | 525 | 0 |
HO586252 | 425 | 276 | 700 | 0 |
CO095011 | 285 | 232 | 516 | 0 |
HO417459 | 274 | 427 | 700 | 0 |
HO417459 | 212 | 228 | 433 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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