Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G073900.1 |
Family | GH28 |
Protein Properties | Length: 473 Molecular Weight: 51564.2 Isoelectric Point: 6.5075 |
Chromosome | Chromosome/Scaffold: 04 Start: 6157646 End: 6160086 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 82 | 431 | 0 |
GGAQLIVPAGKWLTGSFNLTSHFTLFLHKDAVLLASQDEDEWPLLTPLPSYGGVRENAVFGRPGGLIFASNVTDVIITGNNGTVDGQGAVWWEKFNEKKL KKLERPYLIEIMYSDQVQISNITLINSPQWHVHPIYSSNLWIQGVTILAPVDVPNTDGINPDSCTNVIIEDCYIVSGDDCIAVKSGLDQYGIKVGMPMKQ LVIRRITCISPKSAAIALGSEMSGGIEDVRIEDITAINTESAVRVKTAVGRGGYVKDIFVRRMTLKTMKYVFWMIGSYSSHADEGYDPKALPEITNINFR DIAADNVTIPGKLEGLGEGNPFTGICISNVTMTLAEKHKEPAWNCTDVSG |
Full Sequence |
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Protein Sequence Length: 473 Download |
MEFCSKYRKY QIIISTVFIL GSSLAGSTLA EYHQNMVEYK AINCRKHSAV LTDFGAVGDG 60 KTSNTKAFAE AIKKLSKYAP DGGAQLIVPA GKWLTGSFNL TSHFTLFLHK DAVLLASQDE 120 DEWPLLTPLP SYGGVRENAV FGRPGGLIFA SNVTDVIITG NNGTVDGQGA VWWEKFNEKK 180 LKKLERPYLI EIMYSDQVQI SNITLINSPQ WHVHPIYSSN LWIQGVTILA PVDVPNTDGI 240 NPDSCTNVII EDCYIVSGDD CIAVKSGLDQ YGIKVGMPMK QLVIRRITCI SPKSAAIALG 300 SEMSGGIEDV RIEDITAINT ESAVRVKTAV GRGGYVKDIF VRRMTLKTMK YVFWMIGSYS 360 SHADEGYDPK ALPEITNINF RDIAADNVTI PGKLEGLGEG NPFTGICISN VTMTLAEKHK 420 EPAWNCTDVS GVSSNVTPMP CAALPKKSMD CPFPEDKLPI EKVRLQTCSA TS* 480 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03010 | PLN03010 | 6.0e-21 | 54 | 439 | 406 | + polygalacturonase | ||
PLN02218 | PLN02218 | 7.0e-25 | 51 | 413 | 375 | + polygalacturonase ADPG | ||
PLN03003 | PLN03003 | 8.0e-28 | 51 | 444 | 416 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 1.0e-28 | 144 | 429 | 293 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
COG5434 | PGU1 | 4.0e-53 | 49 | 411 | 390 | + Endopygalactorunase [Cell envelope biogenesis, outer membrane] |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAP33475.1 | 0 | 38 | 472 | 37 | 472 | polygalacturonase-like protein [Fragaria x ananassa] |
RefSeq | NP_190464.1 | 0 | 30 | 468 | 22 | 467 | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein [Arabidopsis thaliana] |
RefSeq | XP_002305262.1 | 0 | 36 | 472 | 1 | 437 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002327490.1 | 0 | 13 | 472 | 1 | 452 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002513653.1 | 0 | 13 | 472 | 15 | 473 | polygalacturonase, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3jur_D | 9.94922e-44 | 51 | 417 | 30 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_C | 9.94922e-44 | 51 | 417 | 30 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_B | 9.94922e-44 | 51 | 417 | 30 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 3jur_A | 9.94922e-44 | 51 | 417 | 30 | 414 | A Chain A, The Crystal Structure Of A Hyperthermoactive Exopolygalacturonase From Thermotoga Maritima |
PDB | 1bhe_A | 2e-18 | 81 | 386 | 37 | 336 | A Chain A, Polygalacturonase From Erwinia Carotovora Ssp. Carotovora |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DY257045 | 330 | 92 | 421 | 0 |
DW138823 | 317 | 67 | 383 | 0 |
EB679225 | 303 | 83 | 385 | 0 |
FC906391 | 302 | 39 | 340 | 0 |
DY294251 | 424 | 39 | 447 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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