Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G124100.1 |
Family | PL1 |
Protein Properties | Length: 433 Molecular Weight: 48501.7 Isoelectric Point: 10.3959 |
Chromosome | Chromosome/Scaffold: 04 Start: 11987548 End: 11989435 |
Description | Pectate lyase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
PL1 | 146 | 351 | 0 |
IQKEPLWIIFSKNMNIKLSKELIMSSHKTIDGRGHHVHISYGGGITIQFIHNVIIHGIRIHHIIATSGGNIRDSVDHYGIRTNSDGDGISIFGSTDVWID HVSMSRCTDGLIDAIMGSTAITISNCHFTHHNDAILLGASDSYSGDHLMQVTVAFNHFGQGLVQRMPRCRWGFFHVVNNDYTHWRLYAIGGSKHPTIISQ GNRFIA |
Full Sequence |
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Protein Sequence Length: 433 Download |
MAVGKAMLIF VFTLATLIPS LLADIGIFDD VWQKRAQDAK KMTLEAYVPD PEEATDAFNV 60 EVNNTRRNLR QGRKKYAGPC QVTNPIDRCW RCQRNWAKNR KQLAKCALGF GRRTTGGMAG 120 RIYVVTDSSD NNVMKPKPGT LRHAVIQKEP LWIIFSKNMN IKLSKELIMS SHKTIDGRGH 180 HVHISYGGGI TIQFIHNVII HGIRIHHIIA TSGGNIRDSV DHYGIRTNSD GDGISIFGST 240 DVWIDHVSMS RCTDGLIDAI MGSTAITISN CHFTHHNDAI LLGASDSYSG DHLMQVTVAF 300 NHFGQGLVQR MPRCRWGFFH VVNNDYTHWR LYAIGGSKHP TIISQGNRFI APPESHLKQV 360 TKRDYATKGE WSKWTWRSEN DLMMNGAFFV QSGQPRTKKP NRKFMIKAKP GAVATRMTRF 420 AGALDCKPGR KC* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam04431 | Pec_lyase_N | 8.0e-15 | 24 | 69 | 54 | + Pectate lyase, N terminus. This region is found N terminal to the pectate lyase domain (pfam00544) in some plant pectate lyase enzymes. | ||
COG3866 | PelB | 1.0e-22 | 114 | 423 | 334 | + Pectate lyase [Carbohydrate transport and metabolism] | ||
pfam00544 | Pec_lyase_C | 7.0e-59 | 148 | 349 | 210 | + Pectate lyase. This enzyme forms a right handed beta helix structure. Pectate lyase is an enzyme involved in the maceration and soft rotting of plant tissue. | ||
smart00656 | Amb_all | 3.0e-69 | 158 | 353 | 207 | + Amb_all domain. |
Gene Ontology | |
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GO Term | Description |
GO:0030570 | pectate lyase activity |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79927.1 | 0 | 16 | 432 | 19 | 439 | hypothetical protein [Vitis vinifera] |
EMBL | CBI22159.1 | 0 | 16 | 432 | 48 | 468 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002306040.1 | 0 | 1 | 432 | 1 | 432 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002311599.1 | 0 | 9 | 432 | 1 | 429 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002323835.1 | 0 | 1 | 432 | 1 | 452 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1pxz_B | 0 | 84 | 424 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 1pxz_A | 0 | 84 | 424 | 2 | 345 | A Chain A, 1.7 Angstrom Crystal Structure Of Jun A 1, The Major Allergen From Cedar Pollen |
PDB | 3zsc_A | 0.00000000000005 | 114 | 340 | 21 | 227 | A Chain A, Catalytic Function And Substrate Recognition Of The Pectate Lyase From Thermotoga Maritima |
PDB | 1vbl_A | 0.00000000000006 | 162 | 349 | 120 | 330 | A Chain A, Structure Of The Thermostable Pectate Lyase Pl 47 |
PDB | 1pcl_A | 0.0000000000004 | 162 | 370 | 71 | 307 | A Chain A, Unusual Structural Features In The Parallel Beta-Helix In Pectate Lyases |