Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G156300.1 |
Family | CE8 |
Protein Properties | Length: 318 Molecular Weight: 34216.5 Isoelectric Point: 7.8095 |
Chromosome | Chromosome/Scaffold: 04 Start: 17814971 End: 17816492 |
Description | pectinesterase 11 |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CE8 | 18 | 291 | 0 |
RVEQSGKGDFKKIQDAIDSVPSNNSELVFIWVKPGTYSREKIVVPADKPFITLSGTQPSDTIITWNDGGNIMESPTLTVLASDFVGRYLTIQNTFGSAGK AVALRVSGDRAAFYGCRILSYQDTLLDDTGSHYYSNCYIEGATDFICGNAASLFERCHLHSISTNNGSITAQHRNLASENTGLVFLGCKITGAGTTFLGR PWGAYSRVLYAFTYMSGVIAPAGWDDWADPSKHSTVFYAEYKCYGPGADRSKRVGWSQSLSNDDAAPLLTKDMI |
Full Sequence |
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Protein Sequence Length: 318 Download |
MSAATTGSID MSTAILIRVE QSGKGDFKKI QDAIDSVPSN NSELVFIWVK PGTYSREKIV 60 VPADKPFITL SGTQPSDTII TWNDGGNIME SPTLTVLASD FVGRYLTIQN TFGSAGKAVA 120 LRVSGDRAAF YGCRILSYQD TLLDDTGSHY YSNCYIEGAT DFICGNAASL FERCHLHSIS 180 TNNGSITAQH RNLASENTGL VFLGCKITGA GTTFLGRPWG AYSRVLYAFT YMSGVIAPAG 240 WDDWADPSKH STVFYAEYKC YGPGADRSKR VGWSQSLSND DAAPLLTKDM IGGSSWLRPA 300 PTSFKRGSTI IKPGSKL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02773 | PLN02773 | 1.0e-92 | 16 | 291 | 295 | + pectinesterase | ||
PLN02671 | PLN02671 | 2.0e-95 | 10 | 298 | 306 | + pectinesterase | ||
PLN02665 | PLN02665 | 3.0e-102 | 16 | 301 | 299 | + pectinesterase family protein | ||
PLN02682 | PLN02682 | 3.0e-115 | 22 | 299 | 294 | + pectinesterase family protein | ||
PLN02432 | PLN02432 | 0 | 5 | 298 | 294 | + putative pectinesterase |
Gene Ontology | |
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GO Term | Description |
GO:0005618 | cell wall |
GO:0030599 | pectinesterase activity |
GO:0042545 | cell wall modification |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN79458.1 | 0 | 1 | 311 | 30 | 339 | hypothetical protein [Vitis vinifera] |
EMBL | CBI37658.1 | 0 | 1 | 311 | 48 | 357 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002280496.1 | 0 | 11 | 311 | 1 | 300 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002305435.1 | 0 | 1 | 305 | 11 | 315 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512914.1 | 0 | 10 | 306 | 37 | 332 | Pectinesterase-3 precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1gq8_A | 0 | 17 | 307 | 9 | 318 | A Chain A, Pectin Methylesterase From Carrot |
PDB | 1xg2_A | 0 | 19 | 307 | 7 | 314 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_B | 4e-18 | 14 | 292 | 6 | 335 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntq_A | 4e-18 | 14 | 292 | 6 | 335 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
PDB | 2ntp_B | 4e-18 | 14 | 292 | 6 | 335 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
AM722128 | 263 | 7 | 269 | 0 |
AM721699 | 257 | 7 | 263 | 0 |
AJ795739 | 207 | 4 | 209 | 0 |
DR952425 | 210 | 7 | 216 | 0 |
DR952425 | 57 | 182 | 238 | 5 |
Sequence Alignments (This image is cropped. Click for full image.) |
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