Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G173300.1 |
Family | GH10 |
Protein Properties | Length: 564 Molecular Weight: 63652.9 Isoelectric Point: 5.1266 |
Chromosome | Chromosome/Scaffold: 04 Start: 19189282 End: 19192638 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 218 | 479 | 0 |
SKDFPFGSAIARTILGNLPYQNWFVERFNAAVFENELKWYATEPEQGKVNYTIPDQMLEFVLANQIVARGHNIFWEDPKYNPAWVRDLTGPDLKSAVNFR IQSLMSKYKEEFIHWDVSNEMLHFDFYEERLGPDATLHFYKTAHEADPLASLFLNEFNVVETCTDVSTTVDTYIDKIRELERGGSSMNGIGLESHFSKPN LPLMRAILDKLATLKLPIWLTEVDISNKFDKETQAIYLEQVLREGFSHPAVDGIMLWTAIHP |
Full Sequence |
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Protein Sequence Length: 564 Download |
MQFMAFLSKK SMHKAPILGF SVFLIPFLAF SYDGPLYDFT AYTECKSVPE KPLYNGGIFK 60 DQAPLTQHRI STSSDGSYTP ALILQNLAQN TMYCFSIWVK IQGADSTLVT ASLMANNNST 120 YDCVGTVLAK SGCWSFLKGG FILDSPSSVS ILYFQGTTDK SINVAIASAS VQPFTEQQWR 180 TNQQYIINTE RKRAVTIHVS DSHGDRLQGA SITIEQISKD FPFGSAIART ILGNLPYQNW 240 FVERFNAAVF ENELKWYATE PEQGKVNYTI PDQMLEFVLA NQIVARGHNI FWEDPKYNPA 300 WVRDLTGPDL KSAVNFRIQS LMSKYKEEFI HWDVSNEMLH FDFYEERLGP DATLHFYKTA 360 HEADPLASLF LNEFNVVETC TDVSTTVDTY IDKIRELERG GSSMNGIGLE SHFSKPNLPL 420 MRAILDKLAT LKLPIWLTEV DISNKFDKET QAIYLEQVLR EGFSHPAVDG IMLWTAIHPN 480 GGCYQMCLTD YNLQNLPAGD TVDKLLREWE TGEGNGRTDD HGSYSFFGFL GEYKIMVQYG 540 NRTTNSTLSL SQSDETKHFN IQL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 5.0e-38 | 216 | 458 | 258 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-51 | 215 | 474 | 276 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-70 | 254 | 502 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37893.1 | 0 | 33 | 563 | 100 | 625 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195577.2 | 0 | 33 | 563 | 30 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
RefSeq | XP_002277675.1 | 0 | 26 | 563 | 17 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002468186.1 | 0 | 12 | 563 | 3 | 560 | hypothetical protein SORBIDRAFT_01g041310 [Sorghum bicolor] |
RefSeq | XP_002534153.1 | 0 | 94 | 563 | 6 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v6y_A | 3e-28 | 223 | 474 | 16 | 275 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g4f_B | 4e-28 | 223 | 442 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g4f_A | 4e-28 | 223 | 442 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g3j_A | 4e-28 | 223 | 442 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g3i_A | 4e-28 | 223 | 442 | 16 | 239 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES803339 | 253 | 208 | 460 | 0 |
GR953916 | 293 | 197 | 489 | 0 |
DY024035 | 264 | 277 | 537 | 0 |
DV530577 | 251 | 237 | 487 | 0 |
CX705541 | 239 | 326 | 564 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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