Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G173300.2 |
Family | GH10 |
Protein Properties | Length: 544 Molecular Weight: 61311 Isoelectric Point: 4.972 |
Chromosome | Chromosome/Scaffold: 04 Start: 19189282 End: 19193040 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 198 | 459 | 0 |
SKDFPFGSAIARTILGNLPYQNWFVERFNAAVFENELKWYATEPEQGKVNYTIPDQMLEFVLANQIVARGHNIFWEDPKYNPAWVRDLTGPDLKSAVNFR IQSLMSKYKEEFIHWDVSNEMLHFDFYEERLGPDATLHFYKTAHEADPLASLFLNEFNVVETCTDVSTTVDTYIDKIRELERGGSSMNGIGLESHFSKPN LPLMRAILDKLATLKLPIWLTEVDISNKFDKETQAIYLEQVLREGFSHPAVDGIMLWTAIHP |
Full Sequence |
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Protein Sequence Length: 544 Download |
MIIKNDHSAK VTDGPLYDFT AYTECKSVPE KPLYNGGIFK DQAPLTQHRI STSSDGSYTP 60 ALILQNLAQN TMYCFSIWVK IQGADSTLVT ASLMANNNST YDCVGTVLAK SGCWSFLKGG 120 FILDSPSSVS ILYFQGTTDK SINVAIASAS VQPFTEQQWR TNQQYIINTE RKRAVTIHVS 180 DSHGDRLQGA SITIEQISKD FPFGSAIART ILGNLPYQNW FVERFNAAVF ENELKWYATE 240 PEQGKVNYTI PDQMLEFVLA NQIVARGHNI FWEDPKYNPA WVRDLTGPDL KSAVNFRIQS 300 LMSKYKEEFI HWDVSNEMLH FDFYEERLGP DATLHFYKTA HEADPLASLF LNEFNVVETC 360 TDVSTTVDTY IDKIRELERG GSSMNGIGLE SHFSKPNLPL MRAILDKLAT LKLPIWLTEV 420 DISNKFDKET QAIYLEQVLR EGFSHPAVDG IMLWTAIHPN GGCYQMCLTD YNLQNLPAGD 480 TVDKLLREWE TGEGNGRTDD HGSYSFFGFL GEYKIMVQYG NRTTNSTLSL SQSDETKHFN 540 IQL* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 5.0e-38 | 196 | 438 | 258 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 1.0e-51 | 195 | 454 | 276 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 2.0e-70 | 234 | 482 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37893.1 | 0 | 6 | 543 | 93 | 625 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195577.2 | 0 | 8 | 543 | 25 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
RefSeq | XP_002277675.1 | 0 | 13 | 543 | 24 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002468186.1 | 0 | 8 | 543 | 27 | 560 | hypothetical protein SORBIDRAFT_01g041310 [Sorghum bicolor] |
RefSeq | XP_002534153.1 | 0 | 74 | 543 | 6 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v6y_A | 4e-28 | 203 | 454 | 16 | 275 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g4f_B | 4e-28 | 203 | 422 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g4f_A | 4e-28 | 203 | 422 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g3j_A | 4e-28 | 203 | 422 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g3i_A | 4e-28 | 203 | 422 | 16 | 239 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES803339 | 253 | 188 | 440 | 0 |
GR953916 | 293 | 177 | 469 | 0 |
DY024035 | 264 | 257 | 517 | 0 |
DV530577 | 251 | 217 | 467 | 0 |
CX705541 | 239 | 306 | 544 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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