Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G173300.3 |
Family | GH10 |
Protein Properties | Length: 540 Molecular Weight: 61186.1 Isoelectric Point: 5.0247 |
Chromosome | Chromosome/Scaffold: 04 Start: 19189282 End: 19192315 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 194 | 455 | 0 |
SKDFPFGSAIARTILGNLPYQNWFVERFNAAVFENELKWYATEPEQGKVNYTIPDQMLEFVLANQIVARGHNIFWEDPKYNPAWVRDLTGPDLKSAVNFR IQSLMSKYKEEFIHWDVSNEMLHFDFYEERLGPDATLHFYKTAHEADPLASLFLNEFNVVETCTDVSTTVDTYIDKIRELERGGSSMNGIGLESHFSKPN LPLMRAILDKLATLKLPIWLTEVDISNKFDKETQAIYLEQVLREGFSHPAVDGIMLWTAIHP |
Full Sequence |
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Protein Sequence Length: 540 Download |
MNSPLQIYIT FPWLWMFCWQ CKSVPEKPLY NGGIFKDQAP LTQHRISTSS DGSYTPALIL 60 QNLAQNTMYC FSIWVKIQGA DSTLVTASLM ANNNSTYDCV GTVLAKSGCW SFLKGGFILD 120 SPSSVSILYF QGTTDKSINV AIASASVQPF TEQQWRTNQQ YIINTERKRA VTIHVSDSHG 180 DRLQGASITI EQISKDFPFG SAIARTILGN LPYQNWFVER FNAAVFENEL KWYATEPEQG 240 KVNYTIPDQM LEFVLANQIV ARGHNIFWED PKYNPAWVRD LTGPDLKSAV NFRIQSLMSK 300 YKEEFIHWDV SNEMLHFDFY EERLGPDATL HFYKTAHEAD PLASLFLNEF NVVETCTDVS 360 TTVDTYIDKI RELERGGSSM NGIGLESHFS KPNLPLMRAI LDKLATLKLP IWLTEVDISN 420 KFDKETQAIY LEQVLREGFS HPAVDGIMLW TAIHPNGGCY QMCLTDYNLQ NLPAGDTVDK 480 LLREWETGEG NGRTDDHGSY SFFGFLGEYK IMVQYGNRTT NSTLSLSQSD ETKHFNIQL* 540 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 8.0e-38 | 192 | 434 | 258 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 2.0e-51 | 191 | 450 | 276 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 5.0e-70 | 230 | 478 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37893.1 | 0 | 20 | 539 | 111 | 625 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195577.2 | 0 | 20 | 539 | 41 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
RefSeq | XP_002277675.1 | 0 | 20 | 539 | 35 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002468186.1 | 0 | 21 | 539 | 44 | 560 | hypothetical protein SORBIDRAFT_01g041310 [Sorghum bicolor] |
RefSeq | XP_002534153.1 | 0 | 70 | 539 | 6 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v6y_A | 3e-28 | 199 | 450 | 16 | 275 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g4f_B | 4e-28 | 199 | 418 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g4f_A | 4e-28 | 199 | 418 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g3j_A | 4e-28 | 199 | 418 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g3i_A | 4e-28 | 199 | 418 | 16 | 239 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |