Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G173300.4 |
Family | GH10 |
Protein Properties | Length: 451 Molecular Weight: 51097.4 Isoelectric Point: 4.8527 |
Chromosome | Chromosome/Scaffold: 04 Start: 19189282 End: 19191921 |
Description | Glycosyl hydrolase family 10 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH10 | 105 | 366 | 0 |
SKDFPFGSAIARTILGNLPYQNWFVERFNAAVFENELKWYATEPEQGKVNYTIPDQMLEFVLANQIVARGHNIFWEDPKYNPAWVRDLTGPDLKSAVNFR IQSLMSKYKEEFIHWDVSNEMLHFDFYEERLGPDATLHFYKTAHEADPLASLFLNEFNVVETCTDVSTTVDTYIDKIRELERGGSSMNGIGLESHFSKPN LPLMRAILDKLATLKLPIWLTEVDISNKFDKETQAIYLEQVLREGFSHPAVDGIMLWTAIHP |
Full Sequence |
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Protein Sequence Length: 451 Download |
MANNNSTYDC VGTVLAKSGC WSFLKGGFIL DSPSSVSILY FQGTTDKSIN VAIASASVQP 60 FTEQQWRTNQ QYIINTERKR AVTIHVSDSH GDRLQGASIT IEQISKDFPF GSAIARTILG 120 NLPYQNWFVE RFNAAVFENE LKWYATEPEQ GKVNYTIPDQ MLEFVLANQI VARGHNIFWE 180 DPKYNPAWVR DLTGPDLKSA VNFRIQSLMS KYKEEFIHWD VSNEMLHFDF YEERLGPDAT 240 LHFYKTAHEA DPLASLFLNE FNVVETCTDV STTVDTYIDK IRELERGGSS MNGIGLESHF 300 SKPNLPLMRA ILDKLATLKL PIWLTEVDIS NKFDKETQAI YLEQVLREGF SHPAVDGIML 360 WTAIHPNGGC YQMCLTDYNL QNLPAGDTVD KLLREWETGE GNGRTDDHGS YSFFGFLGEY 420 KIMVQYGNRT TNSTLSLSQS DETKHFNIQL * |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG3693 | XynA | 4.0e-38 | 103 | 345 | 258 | + Beta-1,4-xylanase [Carbohydrate transport and metabolism] | ||
pfam00331 | Glyco_hydro_10 | 3.0e-52 | 102 | 361 | 276 | + Glycosyl hydrolase family 10. | ||
smart00633 | Glyco_10 | 5.0e-71 | 141 | 389 | 269 | + Glycosyl hydrolase family 10. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | ABF94922.1 | 0 | 1 | 450 | 22 | 470 | Glycosyl hydrolase family 10 protein, expressed [Oryza sativa (japonica cultivar-group)] |
EMBL | CBI37893.1 | 0 | 1 | 450 | 177 | 625 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_195577.2 | 0 | 4 | 450 | 115 | 562 | glycosyl hydrolase family 10 protein [Arabidopsis thaliana] |
RefSeq | XP_002277675.1 | 0 | 1 | 450 | 101 | 549 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002534153.1 | 0 | 1 | 450 | 25 | 473 | Endo-1,4-beta-xylanase A precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1v6y_A | 1e-28 | 110 | 361 | 16 | 275 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g4f_B | 2e-28 | 110 | 329 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g4f_A | 2e-28 | 110 | 329 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g3j_A | 2e-28 | 110 | 329 | 16 | 239 | A Chain A, Crystal Structure Of Chimeric Xylanase Between Streptomyces Olivaceoviridis E-86 Fxyn And Cellulomonas Fimi Cex |
PDB | 2g3i_A | 2e-28 | 110 | 329 | 16 | 239 | A Chain A, Structure Of S.Olivaceoviridis Xylanase Q88aR275A MUTANT |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
(1,4)-β-xylan degradation | 3.2.1.8-RXN | EC-3.2.1.8 | endo-1,4-β-xylanase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
ES803339 | 253 | 95 | 347 | 0 |
GR953916 | 293 | 84 | 376 | 0 |
DY024035 | 264 | 164 | 424 | 0 |
DV530577 | 251 | 124 | 374 | 0 |
CX705541 | 239 | 213 | 451 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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