Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G174800.1 |
Family | GH35 |
Protein Properties | Length: 839 Molecular Weight: 93798.4 Isoelectric Point: 9.738 |
Chromosome | Chromosome/Scaffold: 04 Start: 19322963 End: 19327654 |
Description | glycosyl hydrolase family 35 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH35 | 38 | 342 | 0 |
LIINGKRELLFSGSIHYPRSTPEMWPELIQKAKRGGLNVIQTYVFWNIHEPEQGKFNFEGSYDLVKFIKTIGENGMSATIRLGPFIQAEWNHGGLPYWLR EIPDIIFRSDNAPFKLHMERFVTMIINKLKEEKLFASQGGPIILAQIENEYNTVQLAYRNLGVSYVQWAGNMALGLKTGVPWVMCKQKDAPGPVINTCNG RHCGDTFTGPNSPDKPSLWTENWTAQFRVFGDPPSQRSAEDTAFSVARWFSKNGSLVNYYMYHGGTNFDRTAASFVTTRYYDEAPLDEYGLQREPKWGHL KDLHR |
Full Sequence |
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Protein Sequence Length: 839 Download |
MAVKCHVLLI ASLLSLLLTS VIAHGDKKKG VTYDGRSLII NGKRELLFSG SIHYPRSTPE 60 MWPELIQKAK RGGLNVIQTY VFWNIHEPEQ GKFNFEGSYD LVKFIKTIGE NGMSATIRLG 120 PFIQAEWNHG GLPYWLREIP DIIFRSDNAP FKLHMERFVT MIINKLKEEK LFASQGGPII 180 LAQIENEYNT VQLAYRNLGV SYVQWAGNMA LGLKTGVPWV MCKQKDAPGP VINTCNGRHC 240 GDTFTGPNSP DKPSLWTENW TAQFRVFGDP PSQRSAEDTA FSVARWFSKN GSLVNYYMYH 300 GGTNFDRTAA SFVTTRYYDE APLDEYGLQR EPKWGHLKDL HRALNLCKKA LLWGTPNVQR 360 LSADVEARFF EQPRTNDCAA FLANNNTKDP ETVTFRGKKY YLPAKSISIL PDCKTVVYNT 420 MTVVSQHNSR NFVKSRKTDG KLEWKMFSET IPSNLLVDSR IPRELYNLTK DKTDYAWFTT 480 TINVDRNDLS ARKDINPVLR VASLGHAMVA FINGEFIGSA HGSQIEKSFV LQHSVKLKPG 540 INFVTLLGSL VGLPDSGAYM EHRYAGPRGV SILGLNTGTL DLSSNGWGHQ VALSGETAKV 600 FTKEGGRKVT WTKVNKDGPP VTWYKTRFDA PEGKSPVAVR MTGMKKGMIW INGKSIGRYW 660 MNYISPLGEP TQSEYHIPRS YLKPTNNLMV ILEEEGASPE KIEILTVNRD TICSYVTEYH 720 PPNVRSWERK NKKFTPVADD AKPAARLKCP NKKKIVAVQF ASFGDPSGTC GNFAVGTCDS 780 PISKQVVEQH CLGKTSCDIP MDKGLFNGKK DNCPNLTKNL AVQVKCSNKG PKRSANQA* 840 |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam02449 | Glyco_hydro_42 | 6.0e-7 | 53 | 188 | 150 | + Beta-galactosidase. This group of beta-galactosidase enzymes belong to the glycosyl hydrolase 42 family. The enzyme catalyzes the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues. | ||
pfam02140 | Gal_Lectin | 7.0e-18 | 747 | 826 | 83 | + Galactose binding lectin domain. | ||
COG1874 | LacA | 2.0e-18 | 31 | 188 | 164 | + Beta-galactosidase [Carbohydrate transport and metabolism] | ||
pfam01301 | Glyco_hydro_35 | 4.0e-152 | 37 | 344 | 322 | + Glycosyl hydrolases family 35. | ||
PLN03059 | PLN03059 | 0 | 31 | 827 | 824 | + beta-galactosidase; Provisional |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0004565 | beta-galactosidase activity |
GO:0005529 | Interacting selectively and non-covalently with any carbohydrate, which includes monosaccharides, oligosaccharides and polysaccharides as well as substances derived from monosaccharides by reduction of the carbonyl group (alditols), by oxidation of one or more hydroxy groups to afford the corresponding aldehydes, ketones, or carboxylic acids, or by replacement of one or more hydroxy group(s) by a hydrogen atom. Cyclitols are generally not regarded as carbohydrates." [CHEBI:16646, GOC:mah] |
GO:0005975 | carbohydrate metabolic process |
GO:0009341 | beta-galactosidase complex |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
GenBank | AAS76480.1 | 0 | 25 | 827 | 43 | 843 | beta-galactosidase [Gossypium hirsutum] |
GenBank | ACC60982.1 | 0 | 23 | 829 | 20 | 829 | beta-galactosidase 2 precursor [Petunia x hybrida] |
RefSeq | XP_002278545.1 | 0 | 9 | 829 | 8 | 832 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002306183.1 | 0 | 1 | 838 | 1 | 838 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002312963.1 | 0 | 1 | 836 | 1 | 835 | predicted protein [Populus trichocarpa] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 3d3a_A | 2e-38 | 37 | 340 | 14 | 325 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3d3a_A | 0.0002 | 622 | 709 | 509 | 593 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 5e-33 | 31 | 327 | 11 | 318 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_D | 0.0005 | 586 | 721 | 503 | 630 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
PDB | 3thd_C | 5e-33 | 31 | 327 | 11 | 318 | A Chain A, Crystal Structure Of A Beta-Galactosidase From Bacteroides Thetaiotaomicron |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
lactose degradation III | BETAGALACTOSID-RXN | EC-3.2.1.23 | β-galactosidase |