Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G227200.4 |
Family | GH116 |
Protein Properties | Length: 880 Molecular Weight: 98612.1 Isoelectric Point: 6.0822 |
Chromosome | Chromosome/Scaffold: 04 Start: 23256647 End: 23263171 |
Description | Beta-glucosidase, GBA2 type family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH116 | 455 | 816 | 0 |
GQFLYLEGIEYPMWNTYDVHFYASFALIMLFPKLQLSIQRDFAAAVMMHDPSKMHLLLDGQCVTRKVLGAVPHDIGIDDPWFEVNAYNLHNTDRWKDLNP KFVLQVYRDVVATGDKKFAQAAWPSVYVAMAYMDQFDKDGDGMIENDGFPDQTYDTWSVSGVSAYCGGLWVAALQAASALAWEVGDKDSAEYFWFRFQKA KVVYDKLWNGSYFNYDDSNGRNSPSIQADQLAGQWYARACGLLPIVDEDKARSALEKIYNYNFLKVHDGKRGAVNGMLPDGTVDMSDMQSREIWSGVTYA VAATMMQEGLMDMAFHTASGVYEAAWAEQGLGYSFQTPEGWNTNGQYRSLGYMRPLAIWAMQ |
Full Sequence |
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Protein Sequence Length: 880 Download |
MALCQRKCQK KGYFYRSICK AQCYIFSWHS SRWCWVGSIG RSYRGEFQRW QLFPRVEEKP 60 VLANQFSIFV SRSNGKKYCS VLCSRSPDKL EEPAGSGIES WEWNLKGDNS RYHALYPRAW 120 TVYEGEPDPE LRVVCRQISP VIPHNYKESS FPVSVFTFTL YNSGETAADV TLLFTWANSV 180 GGVSEFSGQH LNSTKMMDDG VHCVLLHHKT ANELPPLTFA IAAQETPGVH VSKCPSFVIS 240 GNSQGLTAKE MWNEVKEHGS FDNLNSSGKP VPSEPGSSIG AAIAATSTVP PDSVCTVTFS 300 LAWDCPEVIF ASGRTYHRRY TKFYGTHGDA AANIAHDAIL GHGHWDSQIE AWQRPILEDK 360 RLPEWYPVTL FNELYYLNSG GTIWTDGSPP LHSLATVGGK KFSLDRTGSD LGHQGDTSVD 420 ILGRMTSVLE QIHTPLATNS ALGTNLLQEG EENVGQFLYL EGIEYPMWNT YDVHFYASFA 480 LIMLFPKLQL SIQRDFAAAV MMHDPSKMHL LLDGQCVTRK VLGAVPHDIG IDDPWFEVNA 540 YNLHNTDRWK DLNPKFVLQV YRDVVATGDK KFAQAAWPSV YVAMAYMDQF DKDGDGMIEN 600 DGFPDQTYDT WSVSGVSAYC GGLWVAALQA ASALAWEVGD KDSAEYFWFR FQKAKVVYDK 660 LWNGSYFNYD DSNGRNSPSI QADQLAGQWY ARACGLLPIV DEDKARSALE KIYNYNFLKV 720 HDGKRGAVNG MLPDGTVDMS DMQSREIWSG VTYAVAATMM QEGLMDMAFH TASGVYEAAW 780 AEQGLGYSFQ TPEGWNTNGQ YRSLGYMRPL AIWAMQWTLS SPKLHKQEMN FQVKLEDSLL 840 GHQHHAGFAK VARFLKLPEE ESSVSYLQAL FDYACKKFG* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
COG4354 | COG4354 | 8.0e-26 | 39 | 386 | 361 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
pfam12215 | GBA2_N | 8.0e-57 | 37 | 338 | 311 | + beta-Glucocerebrosidase 2 N terminal. This domain is found in bacteria, archaea and eukaryotes. This domain is typically between 320 to 354 amino acids in length. This domain is found associated with pfam04685. This domain is found in the protein beta-Glucocerebrosidase 2. It is found just after the extreme N terminus. This protein is located in the ER. The N terminal is thought to be the luminal domain while the C terminal is the cytosolic domain. The catalytic domain of GBA-2 is unknown. | ||
COG4354 | COG4354 | 3.0e-68 | 454 | 815 | 380 | + Predicted bile acid beta-glucosidase [Carbohydrate transport and metabolism] | ||
pfam04685 | DUF608 | 1.0e-167 | 455 | 817 | 367 | + Protein of unknown function, DUF608. This family represents a conserved region with a pankaryotic distribution in a number of uncharacterized proteins. |
Gene Ontology | |
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GO Term | Description |
GO:0004348 | glucosylceramidase activity |
GO:0006665 | sphingolipid metabolic process |
GO:0016021 | integral to membrane |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
RefSeq | XP_002264575.1 | 0 | 37 | 878 | 102 | 947 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002275782.1 | 0 | 41 | 878 | 121 | 963 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002328722.1 | 0 | 37 | 878 | 81 | 922 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002331126.1 | 0 | 41 | 879 | 110 | 946 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002528846.1 | 0 | 41 | 879 | 108 | 950 | conserved hypothetical protein [Ricinus communis] |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
JG703027 | 328 | 473 | 800 | 0 |
DY292040 | 353 | 468 | 817 | 0 |
CK110603 | 285 | 530 | 814 | 0 |
DY669443 | 287 | 289 | 569 | 0 |
GT176060 | 351 | 368 | 712 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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