Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.004G234900.1 |
Family | AA3 |
Protein Properties | Length: 766 Molecular Weight: 83687.4 Isoelectric Point: 6.8852 |
Chromosome | Chromosome/Scaffold: 04 Start: 24076825 End: 24080299 |
Description | Long-chain fatty alcohol dehydrogenase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
AA3 | 226 | 758 | 0 |
PVSIRRGKDIDSSRDFSTSNPSLVIKCDAVVVGSGSGGGVVAGVLAKAGYKVLVLEKGNYFARNNLSLLEGPSMDQMYLGAGMLASDDMGVVVLAGSTVG GGSTINWSASIKTPQHVINEWSETYDLELFDSKLYKEALDAVCEKMGVQSDIDEEGFNSAVLRRGCEELGYPVNTIPRNSVPDHYCGWCCFGCKDGRKKG TCETWLKDMVNSGNGAILPGCEAIKVLHERKKGKDRSTASGVAFGFEYNGMKDLCVVESKVTIVAGGALSTPALLKASGLKNANIGKHLHLHPVTMAWGY FPEAPISTTAWPEEQKKSYEGGIMTAMSTVVANVNKSGYGAVIQTPSLHPGMFSGLIPWISGADMKRRMCRFSRTAHVFALARDRGSGTVNSPSSINYRM DAEDEKNLQEGLEKTLRILAAAGAEEIGTHHSTGKSLNVKKVSYREFERFVKEESARPLRDLTGQICSAHQMGSCRMGVNPKESAVNQMGEAWEVEGLFV ADTSVFPTALGVNPMVTVQAIAYCTAQSVVQLL |
Full Sequence |
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Protein Sequence Length: 766 Download |
MESLTAICDT LFPSVYNSSM MAASADDGST NSISTFYQSS ASMAGTPQRV GELFCDRVQH 60 PKKWLIRLTL YLLSTWIGTF ILCGLPSISP SFPYFLRFSQ ISQSKREQIV FSWATSFFYL 120 LRMLFKSIKL VIPLVFFSQV DEKNENLTWK AIGYPGPDPA ALKRQTQTCG LPETLYASLK 180 DDDDDDDDDQ HDCKEEHLFG PLYRGLVDLN LPRDRVADSL RQIGFPVSIR RGKDIDSSRD 240 FSTSNPSLVI KCDAVVVGSG SGGGVVAGVL AKAGYKVLVL EKGNYFARNN LSLLEGPSMD 300 QMYLGAGMLA SDDMGVVVLA GSTVGGGSTI NWSASIKTPQ HVINEWSETY DLELFDSKLY 360 KEALDAVCEK MGVQSDIDEE GFNSAVLRRG CEELGYPVNT IPRNSVPDHY CGWCCFGCKD 420 GRKKGTCETW LKDMVNSGNG AILPGCEAIK VLHERKKGKD RSTASGVAFG FEYNGMKDLC 480 VVESKVTIVA GGALSTPALL KASGLKNANI GKHLHLHPVT MAWGYFPEAP ISTTAWPEEQ 540 KKSYEGGIMT AMSTVVANVN KSGYGAVIQT PSLHPGMFSG LIPWISGADM KRRMCRFSRT 600 AHVFALARDR GSGTVNSPSS INYRMDAEDE KNLQEGLEKT LRILAAAGAE EIGTHHSTGK 660 SLNVKKVSYR EFERFVKEES ARPLRDLTGQ ICSAHQMGSC RMGVNPKESA VNQMGEAWEV 720 EGLFVADTSV FPTALGVNPM VTVQAIAYCT AQSVVQLLSR KRTHY* |
Functional Domains Download unfiltered results here | ||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
TIGR02462 | pyranose_ox | 0.0003 | 695 | 758 | 64 | + pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation. |
TIGR01810 | betA | 0.0002 | 421 | 732 | 337 | + choline dehydrogenase. Choline dehydrogenase catalyzes the conversion of exogenously supplied choline into the intermediate glycine betaine aldehyde, as part of a two-step oxidative reaction leading to the formation of osmoprotectant betaine. This enzymatic system can be found in both gram-positive and gram-negative bacteria. As in Escherichia coli , Staphylococcus xylosus , and Sinorhizobium meliloti, this enzyme is found associated in a transciptionally co-induced gene cluster with betaine aldehyde dehydrogenase, the second catalytic enzyme in this reaction. Other gram-positive organisms have been shown to employ a different enzymatic system, utlizing a soluable choline oxidase or type III alcohol dehydrogenase instead of choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified [Cellular processes, Adaptations to atypical conditions]. |
pfam05199 | GMC_oxred_C | 2.0e-22 | 608 | 748 | 148 | + GMC oxidoreductase. This domain found associated with pfam00732. |
COG2303 | BetA | 3.0e-42 | 270 | 748 | 544 | + Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism] |
pfam00732 | GMC_oxred_N | 2.0e-68 | 299 | 519 | 224 | + GMC oxidoreductase. This family of proteins bind FAD as a cofactor. |
Gene Ontology | |
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GO Term | Description |
GO:0016614 | oxidoreductase activity, acting on CH-OH group of donors |
GO:0050660 | flavin adenine dinucleotide binding |
GO:0055114 | oxidation-reduction process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI29206.1 | 0 | 1 | 759 | 40 | 645 | unnamed protein product [Vitis vinifera] |
RefSeq | NP_193673.2 | 0 | 1 | 762 | 1 | 726 | alcohol oxidase-related [Arabidopsis thaliana] |
RefSeq | XP_002269629.1 | 0 | 1 | 762 | 40 | 787 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002328753.1 | 0 | 1 | 765 | 1 | 748 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002519938.1 | 0 | 49 | 763 | 7 | 710 | electron carrier, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1kdg_B | 0.0005 | 253 | 522 | 9 | 288 | A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase |
PDB | 1kdg_A | 0.0005 | 253 | 522 | 9 | 288 | A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose Dehydrogenase |
PDB | 1naa_B | 0.0006 | 253 | 522 | 4 | 283 | A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam |
PDB | 1naa_A | 0.0006 | 253 | 522 | 4 | 283 | A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In Complex With Cellobionolactam |
PDB | 3ljp_B | 0.001 | 420 | 746 | 204 | 518 | A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant |