Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.005G003500.1 |
Family | CBM43 |
Protein Properties | Length: 625 Molecular Weight: 65495.4 Isoelectric Point: 7.497 |
Chromosome | Chromosome/Scaffold: 05 Start: 212411 End: 215191 |
Description | O-Glycosyl hydrolases family 17 protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
CBM43 | 434 | 515 | 1.5e-34 |
WCVARSGVMDTALQSALDYACGMGGADCSQIQQGGNCYNPNSLQNHASYAFNSYYQKNPVATSCDFGGTATTVNVNPSTGSC |
Full Sequence |
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Protein Sequence Length: 625 Download |
MMAKVASKGL FLFFLSLLTL SSSGTFVGFS YNARGITSAA SLGRIVSFLE LNKVSASHIR 60 VFAADHRVLS TLSNFNVSAD LYLDDSLVEK LTKSKPSAIS WLKAQIVTFL PHVYSSIIVS 120 GNNGLSKLLS ALKSIHSVLS SFHVDNEVKV SVAFSLSFLE NLNRTQEKDL RRILGFIKRT 180 TSFVIVETSL DMDVELGMKD LFIQSMIQKV AVATSLLSPN DAPIVMIIKS LVIPGAKEVA 240 EFGDRVSKSL ENTKIRGQVA GLYAEVSSVE DFAEKELERE HEQIFPSSRR EILRNFKTTL 300 HDDIINPPTV FPTNPGSTPP VVTLLPDTPT PTIVTVPATN PVTVTPTNPV STPLPFPNTT 360 PVNVPPTNPS VNPPPPITNP VTTPAPITVP GAQPVSPVTT YPAPAGNVPV TAPVTNPVAP 420 PATTNAPAIP GQSWCVARSG VMDTALQSAL DYACGMGGAD CSQIQQGGNC YNPNSLQNHA 480 SYAFNSYYQK NPVATSCDFG GTATTVNVNP STGSCIYPSS SSSSSSSTPS LPATTTSPAN 540 PATTSPANPA TTSPANPTTS PPAIGVPGAP PSVLNSSTNP ASSFGFNTPP ALNSSASKSA 600 TLQPFIGCAI LVTSFVARTI ILDN* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
pfam00332 | Glyco_hydro_17 | 0.002 | 45 | 161 | 122 | + Glycosyl hydrolases family 17. | ||
pfam07983 | X8 | 3.0e-24 | 433 | 504 | 78 | + X8 domain. The X8 domain domain contains at least 6 conserved cysteine residues that presumably form three disulphide bridges. The domain is found in an Olive pollen allergen as well as at the C-terminus of several families of glycosyl hydrolases. This domain may be involved in carbohydrate binding. This domain is characteristic of GPI-anchored domains. | ||
smart00768 | X8 | 4.0e-41 | 433 | 517 | 86 | + Possibly involved in carbohydrate binding. The X8 domain, which may be involved in carbohydrate binding, is found in an Olive pollen antigen as well as at the C terminus of family 17 glycosyl hydrolases. It contains 6 conserved cysteine residues which presumably form three disulfide bridges. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CAN65737.1 | 0 | 128 | 623 | 40 | 518 | hypothetical protein [Vitis vinifera] |
RefSeq | XP_002276666.1 | 0 | 22 | 623 | 22 | 614 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002319461.1 | 0 | 2 | 623 | 1 | 614 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002463588.1 | 0 | 2 | 522 | 1 | 520 | hypothetical protein SORBIDRAFT_01g002540 [Sorghum bicolor] |
RefSeq | XP_002512573.1 | 0 | 198 | 623 | 1 | 405 | hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 2jon_A | 5e-18 | 433 | 522 | 12 | 101 | A Chain A, Solution Structure Of The C-Terminal Domain Ole E 9 |
PDB | 2cyg_A | 0.00004 | 44 | 153 | 17 | 130 | A Chain A, Crystal Structure At 1.45- Resolution Of The Major Allergen Endo-Beta-1,3-Glucanase Of Banana As A Molecular Basis For The Latex-Fruit Syndrome |