Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.005G005500.1 |
Family | GH28 |
Protein Properties | Length: 483 Molecular Weight: 53219.6 Isoelectric Point: 7.7598 |
Chromosome | Chromosome/Scaffold: 05 Start: 323174 End: 325630 |
Description | Pectin lyase-like superfamily protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH28 | 102 | 442 | 0 |
DTACLQNESAILLAPDDYSFMIQPTIFTGPCKTSLVFQIDGTIMPPDGPESWPSKMNKRQWLVFYRINGMSMQGGGVIDGRGEKWWNLPCKPHKGINGTT LPGPCDSPVAIRFFTSSNLTVHGLRVKNSPQFHFRFDNCQNVIVQMLSIKSPAQSPNTDGIHIENTYNVQIHYSVVSNGDDCVSIGAGCHNVDIKNITCG PSHGISIGSLGIRNSRACVSNITVTDSVIKYSDNGVRIKTWQGGYGSVSKITFHNIHMETVRNPIIIDQYYCQTRNCTNQTSSVYISDILYTNIKGTYDI RSPPLHLACSDSVPCTNLRLSEIELLPAQGQFMANPFCWNA |
Full Sequence |
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Protein Sequence Length: 483 Download |
MTLSKIFLLA FSFFSLFFFT YTEGRVHAKS RSKHSDIVSH VSLPPAPAPQ APVSPSYYKD 60 SPSPSPTPSP IQSIARVYNV LSFGAVGDGV TDDTQAFKMA WDTACLQNES AILLAPDDYS 120 FMIQPTIFTG PCKTSLVFQI DGTIMPPDGP ESWPSKMNKR QWLVFYRING MSMQGGGVID 180 GRGEKWWNLP CKPHKGINGT TLPGPCDSPV AIRFFTSSNL TVHGLRVKNS PQFHFRFDNC 240 QNVIVQMLSI KSPAQSPNTD GIHIENTYNV QIHYSVVSNG DDCVSIGAGC HNVDIKNITC 300 GPSHGISIGS LGIRNSRACV SNITVTDSVI KYSDNGVRIK TWQGGYGSVS KITFHNIHME 360 TVRNPIIIDQ YYCQTRNCTN QTSSVYISDI LYTNIKGTYD IRSPPLHLAC SDSVPCTNLR 420 LSEIELLPAQ GQFMANPFCW NAYGAMQNLT IPPVSCLLDG IPQFLPQNNI DQCQNNLYQT 480 RM* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN02188 | PLN02188 | 2.0e-80 | 78 | 453 | 383 | + polygalacturonase/glycoside hydrolase family protein | ||
PLN03003 | PLN03003 | 4.0e-81 | 79 | 457 | 386 | + Probable polygalacturonase At3g15720 | ||
pfam00295 | Glyco_hydro_28 | 2.0e-87 | 121 | 426 | 306 | + Glycosyl hydrolases family 28. Glycosyl hydrolase family 28 includes polygalacturonase EC:3.2.1.15 as well as rhamnogalacturonase A(RGase A), EC:3.2.1.-. These enzymes is important in cell wall metabolism. | ||
PLN02218 | PLN02218 | 9.0e-100 | 79 | 426 | 351 | + polygalacturonase ADPG | ||
PLN02793 | PLN02793 | 2.0e-126 | 76 | 453 | 380 | + Probable polygalacturonase |
Gene Ontology | |
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GO Term | Description |
GO:0004650 | polygalacturonase activity |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI37004.1 | 0 | 77 | 473 | 88 | 484 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002276945.1 | 0 | 1 | 473 | 1 | 464 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002318932.1 | 0 | 1 | 478 | 1 | 478 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002330008.1 | 0 | 57 | 464 | 1 | 408 | predicted protein [Populus trichocarpa] |
RefSeq | XP_002512560.1 | 0 | 1 | 473 | 1 | 470 | Polygalacturonase precursor, putative [Ricinus communis] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1nhc_F | 3e-26 | 141 | 430 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_E | 3e-26 | 141 | 430 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_D | 3e-26 | 141 | 430 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_C | 3e-26 | 141 | 430 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
PDB | 1nhc_B | 3e-26 | 141 | 430 | 41 | 322 | A Chain A, Structural Insights Into The Processivity Of Endopolygalacturonase I From Aspergillus Niger |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
homogalacturonan degradation | RXN-2103 | EC-3.2.1.15 | polygalacturonase |