| Basic Information | |
|---|---|
| Species | Populus trichocarpa |
| Cazyme ID | Potri.005G012800.1 |
| Family | CE8 |
| Protein Properties | Length: 325 Molecular Weight: 35717.3 Isoelectric Point: 4.8519 |
| Chromosome | Chromosome/Scaffold: 05 Start: 984315 End: 986061 |
| Description | Pectin lyase-like superfamily protein |
| View CDS | |
| External Links |
|---|
| NCBI Taxonomy |
| Plaza |
| CAZyDB |
| Signature Domain Download full data set without filtering | |||
|---|---|---|---|
| Family | Start | End | Evalue |
| CE8 | 39 | 314 | 0 |
| IVVDQSGMGNFRAIQEAIDSIPANSDQWIKVQINPGTYTEQVAIPIDKPCIFLEGQDSSLTTITYDAHERTDLSATFASRPTNIVAKGITFKNSFNLGAV PAVSAVIYGDKTAFYNCAFLGFQDTIWDALGRHYFSNCYIEGAVDFIFGVGKSFYEGCSINVTGDGFITAQGREFPFETNGFVFSNCTVTGLQGFQAYLG RAYRPYATVIFQSTFLSEVVRPLGWDAWQYPGQESNFTFAEIDCKGPGSDTSKRVPWEKKLDGSQLEKFSKSSFID | |||
| Full Sequence |
|---|
| Protein Sequence Length: 325 Download |
| MEHPLFIILV TLFIITSRGI SQVSDCKPGN NGSKVAITIV VDQSGMGNFR AIQEAIDSIP 60 ANSDQWIKVQ INPGTYTEQV AIPIDKPCIF LEGQDSSLTT ITYDAHERTD LSATFASRPT 120 NIVAKGITFK NSFNLGAVPA VSAVIYGDKT AFYNCAFLGF QDTIWDALGR HYFSNCYIEG 180 AVDFIFGVGK SFYEGCSINV TGDGFITAQG REFPFETNGF VFSNCTVTGL QGFQAYLGRA 240 YRPYATVIFQ STFLSEVVRP LGWDAWQYPG QESNFTFAEI DCKGPGSDTS KRVPWEKKLD 300 GSQLEKFSKS SFIDRDGWLA KLPL* |
| Functional Domains Download unfiltered results here | ||||||
|---|---|---|---|---|---|---|
| Cdd ID | Domain | E-Value | Start | End | Length | Domain Description |
| PLN02480 | PLN02480 | 5.0e-79 | 38 | 319 | 294 | + Probable pectinesterase |
| PLN02432 | PLN02432 | 6.0e-88 | 36 | 319 | 286 | + putative pectinesterase |
| PLN02665 | PLN02665 | 1.0e-89 | 38 | 319 | 293 | + pectinesterase family protein |
| PLN02176 | PLN02176 | 1.0e-103 | 31 | 324 | 308 | + putative pectinesterase |
| PLN02497 | PLN02497 | 1.0e-121 | 36 | 324 | 303 | + probable pectinesterase |
| Gene Ontology | |
|---|---|
| GO Term | Description |
| GO:0005618 | cell wall |
| GO:0030599 | pectinesterase activity |
| GO:0042545 | cell wall modification |
| Annotations - NR Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| RefSeq | XP_002318946.1 | 0 | 1 | 324 | 1 | 339 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002330032.1 | 0 | 1 | 324 | 1 | 324 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002338931.1 | 0 | 78 | 246 | 1 | 169 | predicted protein [Populus trichocarpa] |
| RefSeq | XP_002515259.1 | 0 | 25 | 323 | 26 | 339 | pectinesterase, putative [Ricinus communis] |
| RefSeq | XP_002529267.1 | 0 | 26 | 323 | 29 | 337 | Pectinesterase-2 precursor, putative [Ricinus communis] |
| Annotations - PDB Download unfiltered results here | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
| PDB | 1gq8_A | 9e-38 | 33 | 319 | 3 | 308 | A Chain A, Pectin Methylesterase From Carrot |
| PDB | 1xg2_A | 5e-31 | 40 | 319 | 6 | 304 | B Chain B, Crystal Structure Of The Complex Between Pectin Methylesterase And Its Inhibitor Protein |
| PDB | 3uw0_A | 0.00000000000002 | 40 | 308 | 34 | 353 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_B | 0.000000000002 | 49 | 323 | 18 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| PDB | 2ntq_A | 0.000000000002 | 49 | 323 | 18 | 342 | A Chain A, Pectin Methylesterase From Yersinia Enterocolitica |
| Metabolic Pathways | |||
|---|---|---|---|
| Pathway Name | Reaction | EC | Protein Name |
| homogalacturonan degradation | RXN-2102 | EC-3.1.1.11 | pectinesterase |
