Basic Information | |
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Species | Populus trichocarpa |
Cazyme ID | Potri.005G059200.1 |
Family | GH3 |
Protein Properties | Length: 399 Molecular Weight: 43112 Isoelectric Point: 5.9916 |
Chromosome | Chromosome/Scaffold: 05 Start: 4174651 End: 4176737 |
Description | Glycosyl hydrolase family protein |
View CDS |
External Links |
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NCBI Taxonomy |
Plaza |
CAZyDB |
Signature Domain Download full data set without filtering | |||
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Family | Start | End | Evalue |
GH3 | 26 | 110 | 1.4e-22 |
KDKVAACAKHFVGDGGTTKGINENNTVIGYHGLMSIHIPGYFHSIIKGVSTIMISYSSWNGQKMHANRYLVKTVLKDILKFRIMV |
Full Sequence |
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Protein Sequence Length: 399 Download |
MPCVHALVQG DVPPDSRKGV PCVGGKDKVA ACAKHFVGDG GTTKGINENN TVIGYHGLMS 60 IHIPGYFHSI IKGVSTIMIS YSSWNGQKMH ANRYLVKTVL KDILKFRIMV PYNHTEFINI 120 VTDLVNNNYI SMDRIDDAVR RILQVKLTLG LFETPLADET LVDQLESQAH RDLAREAVRK 180 SLVLLKNGEN ADAPVLPLPK KASRILVAGS HANNLGYQCG GWTATWQGVD GNNYTAGTTI 240 LSGISAAVDP STEIVYNNNP DADFIKSNNF SYDIVVVGET PYAETAGDSL NLTIAEPGPS 300 TILNVCGNVK CVVVTVSGRP VVIEPYESQI DALVATWLPG TEGQGVADVL FGDYGFTGKL 360 PRTWFKTVDQ LPMNVGDSHY DPLFPYDFGL TTKPVNAS* |
Functional Domains Download unfiltered results here | ||||||||
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Cdd ID | Domain | E-Value | Start | End | Length | Domain Description | ||
PLN03080 | PLN03080 | 2.0e-10 | 135 | 382 | 276 | + Probable beta-xylosidase; Provisional | ||
pfam00933 | Glyco_hydro_3 | 2.0e-21 | 27 | 143 | 151 | + Glycosyl hydrolase family 3 N terminal domain. | ||
COG1472 | BglX | 4.0e-33 | 27 | 225 | 235 | + Beta-glucosidase-related glycosidases [Carbohydrate transport and metabolism] | ||
PRK15098 | PRK15098 | 3.0e-38 | 9 | 391 | 485 | + beta-D-glucoside glucohydrolase; Provisional | ||
pfam01915 | Glyco_hydro_3_C | 3.0e-42 | 182 | 391 | 238 | + Glycosyl hydrolase family 3 C-terminal domain. This domain is involved in catalysis and may be involved in binding beta-glucan. This domain is found associated with pfam00933. |
Gene Ontology | |
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GO Term | Description |
GO:0004553 | hydrolase activity, hydrolyzing O-glycosyl compounds |
GO:0005975 | carbohydrate metabolic process |
Annotations - NR Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
EMBL | CBI22347.1 | 0 | 8 | 398 | 108 | 533 | unnamed protein product [Vitis vinifera] |
EMBL | CBI22348.1 | 0 | 8 | 398 | 108 | 533 | unnamed protein product [Vitis vinifera] |
EMBL | CBI27259.1 | 0 | 8 | 397 | 108 | 532 | unnamed protein product [Vitis vinifera] |
RefSeq | XP_002266589.1 | 0 | 8 | 398 | 203 | 628 | PREDICTED: hypothetical protein [Vitis vinifera] |
RefSeq | XP_002266675.1 | 0 | 8 | 398 | 203 | 628 | PREDICTED: hypothetical protein [Vitis vinifera] |
Annotations - PDB Download unfiltered results here | |||||||
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Source | Hit ID | E-Value | Query Start | Query End | Hit Start | Hit End | Description |
PDB | 1j8v_A | 0 | 8 | 392 | 180 | 599 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1iex_A | 0 | 8 | 392 | 180 | 599 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1iew_A | 0 | 8 | 392 | 180 | 599 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1iev_A | 0 | 8 | 392 | 180 | 599 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
PDB | 1ieq_A | 0 | 8 | 392 | 180 | 599 | A Chain A, Crystal Structure Of The Nasturtium Seedling Mutant Xyloglucanase Isoform Nxg1-Delta-Yniig |
Metabolic Pathways | |||
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Pathway Name | Reaction | EC | Protein Name |
coumarin biosynthesis (via 2-coumarate) | RXN-8036 | EC-3.2.1.21 | β-glucosidase |
linamarin degradation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-13602 | EC-3.2.1.21 | β-glucosidase |
linustatin bioactivation | RXN-5341 | EC-3.2.1.21 | β-glucosidase |
lotaustralin degradation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-13603 | EC-3.2.1.21 | β-glucosidase |
neolinustatin bioactivation | RXN-9674 | EC-3.2.1.21 | β-glucosidase |
taxiphyllin bioactivation | RXN-13600 | EC-3.2.1.21 | β-glucosidase |
EST Download unfiltered results here | ||||
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Hit | Length | Start | End | EValue |
DW479507 | 287 | 108 | 394 | 0 |
EB438265 | 289 | 108 | 396 | 0 |
CV236845 | 258 | 137 | 394 | 0 |
EB438530 | 284 | 113 | 396 | 0 |
DW500162 | 277 | 108 | 384 | 0 |
Sequence Alignments (This image is cropped. Click for full image.) |
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